WormBase Tree Display for Gene: WBGene00005381
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| WBGene00005381 | SMap | S_parent | Sequence | C41G6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srh-165 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | C41G6.9 | |||||||||
| Molecular_name | C41G6.9 | |||||||||
| Other_name | CELE_C41G6.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srh-165 | |||||||||
| DB_info | Database | AceView | gene | 5P699 | ||||||
| WormQTL | gene | WBGene00005381 | ||||||||
| WormFlux | gene | WBGene00005381 | ||||||||
| NDB | locus_tag | CELE_C41G6.9 | ||||||||
| NCBI | gene | 183385 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 18 Feb 2016 15:21:18 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srh | |||||||||
| Allele (27) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00079223 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00153517 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| WBGene00191112 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00132049 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00068960 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00215966 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00111586 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| Paralog (195) | ||||||||||
| Structured_description | Automated_description | Is affected by several genes including eat-2; mut-2; and mir-34 based on tiling array and microarray studies. Is affected by allantoin and Sirolimus based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C41G6.9:wp252 | ||||||||
| Corresponding_pseudogene | C41G6.9 | |||||||||
| Experimental_info | Expr_pattern | Expr1016465 | ||||||||
| Expr1146302 | ||||||||||
| Microarray_results (15) | ||||||||||
| Expression_cluster (16) | ||||||||||
| Map_info | Map | V | Position | 7.58424 | Error | 0.001342 | ||||
| Positive | Positive_clone | C41G6 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Remark | Pseudogene tag removed because the corresponding sequence object for this gene has not been annotated as a pseudogene. This discrepancy may reflect that the sequence object was once a pseudogene and has subsequently been converted into a real gene (without this Locus object being updated). Alternatively it may be that this gene is a pseudogene in another C. elegans strain, but not in the sequenced N2 strain. [krb 030806] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||||
| Method | Gene |
