WormBase Tree Display for Gene: WBGene00005747
expand all nodes | collapse all nodes | view schema
| WBGene00005747 | Evidence | Person_evidence | WBPerson522 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F57G8 | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srv-36 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | F57G8.8 | |||||||||
| Molecular_name | F57G8.8 | |||||||||
| Other_name | CELE_F57G8.8 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srv-36 | |||||||||
| DB_info | Database | AceView | gene | 5Q806 | ||||||
| WormQTL | gene | WBGene00005747 | ||||||||
| NDB | locus_tag | CELE_F57G8.8 | ||||||||
| NCBI | gene | 186469 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 06 Feb 2012 10:00:22 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srv | |||||||||
| Allele (264) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00042446 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Paralog | WBGene00005746 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Enriched in OLL; PVD; cephalic sheath cell; dopaminergic neurons; and hypodermis based on tiling array studies. Is affected by several genes including eat-2; sir-2.1; and hpl-2 based on microarray and RNA-seq studies. Is affected by resveratrol; adsorbable organic bromine compound; and allantoin based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F57G8.8:wp107 | ||||||||
| F57G8.8:wp195 | ||||||||||
| F57G8.8:wp230 | ||||||||||
| Corresponding_pseudogene | F57G8.8 | |||||||||
| Other_sequence | MH02439 | |||||||||
| MH09896 | ||||||||||
| MH09883 | ||||||||||
| MHC07469_1 | ||||||||||
| Experimental_info | Expr_pattern | Expr1015267 | ||||||||
| Expr1152645 | ||||||||||
| Microarray_results (25) | ||||||||||
| Expression_cluster (32) | ||||||||||
| Interaction (36) | ||||||||||
| Map_info | Map | V | Position | 9.97904 | Error | 0.00199 | ||||
| Positive | Positive_clone | F57G8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Pseudogene tag removed because the corresponding sequence object for this gene has not been annotated as a pseudogene. This discrepancy may reflect that the sequence object was once a pseudogene and has subsequently been converted into a real gene (without this Locus object being updated). Alternatively it may be that this gene is a pseudogene in another C. elegans strain, but not in the sequenced N2 strain. [krb 030806] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||||
| Method | Gene |
