WormBase Tree Display for Gene: WBGene00006038

WBGene00006038 SMap: S_parent: Sequence: E03H12
  Identity: Version: 1
    Name: CGC_name: ssp-9 Person_evidence: WBPerson680
      Sequence_name: E03H12.10
      Molecular_name: E03H12.10
        E03H12.10.1
        CE09149
      Other_name: CELE_E03H12.10 Accession_evidence: NDB BX284604
      Public_name: ssp-9
    DB_info: Database: AceView gene 4F758
        WormQTL gene WBGene00006038
        WormFlux gene WBGene00006038
        NDB locus_tag CELE_E03H12.10
        Panther gene CAEEL|WormBase=WBGene00006038|UniProtKB=Q23058
          family PTHR22947
        NCBI gene 177264
        RefSeq protein NM_068296.7
        SwissProt UniProtAcc Q23058
        UniProt_GCRP UniProtAcc Q23058
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:39 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ssp
    Allele: WBVar01499754
      WBVar01499242
      WBVar01499633
      WBVar01500245
    Legacy_information: [C.elegansII] NMK. Sperm-specific transcript, 0.5 kb. Related to ssp-10. [BA]
    RNASeq_FPKM (74)
    Ortholog (44)
    Paralog (33)
    Structured_description: Automated_description: Enriched in several structures, including ALM; BDU; amphid sheath cell; germ line; and sperm based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray; proteomic; and RNA-seq studies. Is affected by eighteen chemicals including Ethanol; methylmercuric chloride; and D-glucose based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: PapD-like superfamily; Major sperm protein (MSP) domain; Immunoglobulin-like fold; MSP (Major sperm protein) domain; and Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: E03H12.10
    Corresponding_transcript: E03H12.10.1
    Other_sequence: CJC00050_1
      PSC00326
      AE00665
      Acan_isotig00092
      GW409065.1
    Associated_feature: WBsf230035
  Experimental_info: RNAi_result: WBRNAi00012670 Inferred_automatically: RNAi_primary
      WBRNAi00054454 Inferred_automatically: RNAi_primary
      WBRNAi00007495 Inferred_automatically: RNAi_primary
      WBRNAi00019423 Inferred_automatically: RNAi_primary
      WBRNAi00043640 Inferred_automatically: RNAi_primary
      WBRNAi00022602 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1018025
      Expr1147626
      Expr2016939
      Expr2035087
    Drives_construct: WBCnstr00034581
    Construct_product: WBCnstr00034581
    Microarray_results (20)
    Expression_cluster (157)
    Interaction (239)
  Map_info: Map: IV Position: 1.40074
    Positive: Positive_clone: E03H12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024421
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene