WormBase Tree Display for Gene: WBGene00006056
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| WBGene00006056 | SMap | S_parent | Sequence | F32B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sss-1 | Person_evidence | WBPerson680 | |||||
| Sequence_name | F32B6.5 | ||||||||
| Molecular_name | F32B6.5 | ||||||||
| F32B6.5.1 | |||||||||
| CE09860 | |||||||||
| Other_name | CELE_F32B6.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | sss-1 | ||||||||
| DB_info | Database | AceView | gene | 4K658 | |||||
| WormQTL | gene | WBGene00006056 | |||||||
| WormFlux | gene | WBGene00006056 | |||||||
| NDB | locus_tag | CELE_F32B6.5 | |||||||
| NCBI | gene | 177843 | |||||||
| RefSeq | protein | NM_069379.7 | |||||||
| TREEFAM | TREEFAM_ID | TF323035 | |||||||
| TrEMBL | UniProtAcc | Q9XVP7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVP7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sss | ||||||||
| Allele (14) | |||||||||
| Strain | WBStrain00051226 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00006057 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WBGene00017851 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; amphid sheath cell; germ line; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray and RNA-seq studies. Is affected by thirty-one chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32B6.5 | |||||||
| Corresponding_transcript | F32B6.5.1 | ||||||||
| Associated_feature | WBsf1018015 | ||||||||
| WBsf230630 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018682 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014207 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046116 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031666 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022658 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053277 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016699 | ||||||||
| Expr1149999 | |||||||||
| Expr2016945 | |||||||||
| Expr2035093 | |||||||||
| Drives_construct | WBCnstr00034569 | ||||||||
| Construct_product | WBCnstr00034569 | ||||||||
| Microarray_results (13) | |||||||||
| Expression_cluster (268) | |||||||||
| Interaction (227) | |||||||||
| Map_info | Map | IV | Position | 4.43802 | Error | 0.000413 | |||
| Positive | Positive_clone | F32B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00057218 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
