WormBase Tree Display for Gene: WBGene00006227
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| WBGene00006227 | SMap | S_parent | Sequence | T13F3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | str-183 | Person_evidence | WBPerson42 | ||||||
| Sequence_name | T13F3.1 | |||||||||
| Molecular_name | T13F3.1 | |||||||||
| Other_name | CELE_T13F3.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | str-183 | |||||||||
| DB_info | Database | AceView | gene | 5Q757 | ||||||
| WormQTL | gene | WBGene00006227 | ||||||||
| WormFlux | gene | WBGene00006227 | ||||||||
| NDB | locus_tag | CELE_T13F3.1 | ||||||||
| NCBI | gene | 188478 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 18 Feb 2016 15:22:21 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | str | |||||||||
| Allele (86) | ||||||||||
| Strain | WBStrain00037523 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00096195 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00063762 | Caenorhabditis remanei | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00035993 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||||
| OrthoMCL | ||||||||||
| OMA | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00162708 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| TreeFam | ||||||||||
| Inparanoid_8 | ||||||||||
| WBGene00111053 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00117555 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00093978 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00100422 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00100010 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| Paralog (232) | ||||||||||
| Structured_description | Automated_description | Enriched in sensory neurons and somatic gonad precursor based on RNA-seq studies. Is affected by several genes including daf-16; daf-12; and eat-2 based on microarray and RNA-seq studies. Is affected by six chemicals including Psoralens; allantoin; and metformin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T13F3.1:wp252 | ||||||||
| Corresponding_pseudogene | T13F3.1 | |||||||||
| Experimental_info | Expr_pattern | Expr1019704 | ||||||||
| Expr1156862 | ||||||||||
| Microarray_results (14) | ||||||||||
| Expression_cluster (52) | ||||||||||
| Interaction (35) | ||||||||||
| Map_info | Map | V | Position | 9.92499 | Error | 0.003136 | ||||
| Positive | Positive_clone | T13F3 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
