WormBase Tree Display for Gene: WBGene00006377

WBGene00006377 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F39H2
  Identity: Version: 1
    Name: CGC_name: syp-3 Person_evidence: WBPerson1547
      Sequence_name: F39H2.4
      Molecular_name: F39H2.4
        F39H2.4.1
        CE41238
        F39H2.4.2
      Other_name: CELE_F39H2.4 Accession_evidence: NDB BX284601
      Public_name: syp-3
    DB_info: Database: AceView gene 1J240
        WormQTL gene WBGene00006377
        WormFlux gene WBGene00006377
        NDB locus_tag CELE_F39H2.4
        NCBI gene 172667
        RefSeq protein NM_059944.9
        SwissProt UniProtAcc O62238
        TREEFAM TREEFAM_ID TF321044
        UniProt_GCRP UniProtAcc O62238
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syp
    Allele (23)
    Strain: WBStrain00035897
      WBStrain00000285
      WBStrain00004068
      WBStrain00005200
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog (21)
    Structured_description: Concise_description: syp-3 encodes a coiled-coil protein; SYP-3 activity is required during meiosis for chromosome synapsis and chiasma formation, specifically for proper assembly of the central region of the synaptonemal complex; thus, SYP-3 is essential activity is essential for normal embryonic development; immunolocalization studies indicate that SYP-3 is likely a structural component of the central element of the synaptonemal complex. Paper_evidence: WBPaper00030764
          Curator_confirmed: WBPerson1843
          Date_last_updated: 07 Aug 2007 00:00:00
      Automated_description: Involved in chiasma assembly; embryo development; and synaptonemal complex assembly. Located in central element and lateral element. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F39H2.4
    Corresponding_CDS_history: F39H2.4:wp177
    Corresponding_transcript: F39H2.4.1
      F39H2.4.2
    Other_sequence: CBC09849_1
      CR11577
      CR11576
      CRC00845_1
    Associated_feature: WBsf219956
      WBsf219957
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr7827
      Expr1023576
      Expr1032575
      Expr1150680
      Expr2017186
      Expr2035322
    Drives_construct: WBCnstr00006071
      WBCnstr00020275
      WBCnstr00034382
    Construct_product: WBCnstr00006066
      WBCnstr00006071
      WBCnstr00019846
      WBCnstr00020275
      WBCnstr00034382
    Antibody: WBAntibody00001263
      WBAntibody00001264
      WBAntibody00001991
    Microarray_results (19)
    Expression_cluster (141)
    Interaction (259)
  Map_info: Map: I Position: 3.01702 Error: 0.000197
    Positive: Positive_clone: F39H2 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4728
    Pseudo_map_position
  Reference (33)
  Remark: Sequence connection from [Villeneuve AM]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene