WormBase Tree Display for Gene: WBGene00006380
expand all nodes | collapse all nodes | view schema
| WBGene00006380 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F31E8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tab-1 | Person_evidence | WBPerson95 | |||||
| Sequence_name | F31E8.3 | ||||||||
| Molecular_name | F31E8.3a | ||||||||
| F31E8.3a.1 | |||||||||
| CE01930 | |||||||||
| F31E8.3b | |||||||||
| CE51978 | |||||||||
| F31E8.3b.1 | |||||||||
| Other_name | mec-16 | ||||||||
| ceh-29 | |||||||||
| CELE_F31E8.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | tab-1 | ||||||||
| DB_info | Database | AceView | gene | 2H93 | |||||
| WormQTL | gene | WBGene00006380 | |||||||
| WormFlux | gene | WBGene00006380 | |||||||
| NDB | locus_tag | CELE_F31E8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006380|UniProtKB=Q19937 | |||||||
| family | PTHR24327 | ||||||||
| NCBI | gene | 185156 | |||||||
| RefSeq | protein | NM_062991.4 | |||||||
| NM_001351904.3 | |||||||||
| TrEMBL | UniProtAcc | Q19937 | |||||||
| A0A1X7RC60 | |||||||||
| UniProt_GCRP | UniProtAcc | Q19937 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tab | ||||||||
| Allele (31) | |||||||||
| Legacy_information | [C.elegansII] u271 : fails to respond to prod (strong touch).NA1. [TU] | ||||||||
| Strain | WBStrain00029728 | ||||||||
| WBStrain00029854 | |||||||||
| WBStrain00029867 | |||||||||
| WBStrain00032418 | |||||||||
| WBStrain00036728 | |||||||||
| WBStrain00036832 | |||||||||
| WBStrain00036895 | |||||||||
| WBStrain00048952 | |||||||||
| WBStrain00052022 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002768 | ||||||||
| 00002769 | |||||||||
| 00002770 | |||||||||
| 00002771 | |||||||||
| 00002772 | |||||||||
| 00002773 | |||||||||
| 00002774 | |||||||||
| 00002775 | |||||||||
| 00002776 | |||||||||
| 00113979 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00000446 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000463 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00013583 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tab-1 encodes a homeodomain protein homologous to Drosophila bsh (brain-specific homeodomain protein) and the vertebrate BarH-like homeodomain protein 1; TAB-1 is required, during early larval development, for backward movement in response to anterior touch with a wire, while during later larval stages, TAB-1 is required for response to gentle touch with a hair; TAB-1 expression begins in the early embryo in approximately 20-30 cells and is then restricted to a subset of neurons including AIB, AVJ, and RIV; TAB-1 expression in AIB may be controlled by the UNC-42 homeodomain protein and TAB-1 may autoregulate in the AVJ and RIV neurons. | Paper_evidence | WBPaper00004567 | |||||
| WBPaper00010972 | |||||||||
| WBPaper00011245 | |||||||||
| WBPaper00023035 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head neurons; intestine; and lateral ganglion. Is an ortholog of human BSX (brain specific homeobox). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F31E8.3a | |||||||
| F31E8.3b | |||||||||
| Corresponding_transcript | F31E8.3a.1 | ||||||||
| F31E8.3b.1 | |||||||||
| Other_sequence | MC03913 | ||||||||
| JI178805.1 | |||||||||
| Dviv_isotig26183 | |||||||||
| Acan_isotig12185 | |||||||||
| MCC03763_1 | |||||||||
| Oden_isotig21271 | |||||||||
| Associated_feature | WBsf644327 | ||||||||
| WBsf978825 | |||||||||
| WBsf988252 | |||||||||
| WBsf988253 | |||||||||
| WBsf1012426 | |||||||||
| WBsf221514 | |||||||||
| Transcription_factor | WBTranscriptionFactor000448 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00022347 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031623 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046027 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7532 | ||||||||
| Expr11337 | |||||||||
| Expr15429 | |||||||||
| Expr15639 | |||||||||
| Expr1025526 | |||||||||
| Expr1032577 | |||||||||
| Expr1149923 | |||||||||
| Expr2017201 | |||||||||
| Expr2035337 | |||||||||
| Drives_construct | WBCnstr00012677 | ||||||||
| WBCnstr00018783 | |||||||||
| WBCnstr00034380 | |||||||||
| Construct_product | WBCnstr00018783 | ||||||||
| WBCnstr00034380 | |||||||||
| WBCnstr00038781 | |||||||||
| WBCnstr00038783 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (86) | |||||||||
| Map_info | Map | II | Position | 0.114987 | Error | 0.002388 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | F31E8 | Person_evidence | WBPerson837 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 1057 | |||||||
| 1058 | |||||||||
| Pos_neg_data | 2610 | ||||||||
| 2611 | |||||||||
| 2612 | |||||||||
| Reference (15) | |||||||||
| Remark | Sequence connection from [Burglin T] | ||||||||
| old_name ceh-29 becomes new_name tab-1 from [Burglin T]. | |||||||||
| Method | Gene |
