WormBase Tree Display for Gene: WBGene00006384
expand all nodes | collapse all nodes | view schema
| WBGene00006384 | SMap | S_parent | Sequence | C11G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | taf-3 | |||||||
| Sequence_name | C11G6.1 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_C11G6.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | taf-3 | ||||||||
| DB_info | Database | AceView | gene | XQ959 | |||||
| WormQTL | gene | WBGene00006384 | |||||||
| WormFlux | gene | WBGene00006384 | |||||||
| NDB | locus_tag | CELE_C11G6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006384|UniProtKB=E9P861 | |||||||
| family | PTHR46452 | ||||||||
| NCBI | gene | 181704 | |||||||
| RefSeq | protein | NM_001270344.3 | |||||||
| NM_001270345.3 | |||||||||
| NM_001270343.4 | |||||||||
| NM_001347279.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF316513 | |||||||
| TrEMBL | UniProtAcc | E9P862 | |||||||
| E9P861 | |||||||||
| E9P863 | |||||||||
| A0A1I6CMF0 | |||||||||
| UniProt_GCRP | UniProtAcc | E9P861 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 21 Jan 2011 10:43:00 | WBPerson1983 | Event | Acquires_merge | WBGene00007524 | ||||
| Acquires_merge | WBGene00007524 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | taf | ||||||||
| Allele (211) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002542 | ||||||||
| 00002543 | |||||||||
| 00002544 | |||||||||
| 00002545 | |||||||||
| 00002546 | |||||||||
| 00113990 | |||||||||
| Ortholog (30) | |||||||||
| Structured_description | Concise_description | taf-3 encodes the C. elegans ortholog of mammalian TAF3(TAFII140), a component of the RNA polymerase II TFIID transcription complex; TAF-3 contains a histone fold-like domain in its N-terminus and by homology, is predicted to function in transcriptional regulation; however, as loss of taf-3 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of taf-3 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00012881 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable p53 binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is an ortholog of human TAF3 (TATA-box binding protein associated factor 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C11G6.1a | |||||||
| C11G6.1b | |||||||||
| C11G6.1c | |||||||||
| C11G6.1d | |||||||||
| Corresponding_CDS_history | C11G6.1:wp223 | ||||||||
| C11G6.3:wp223 | |||||||||
| Corresponding_transcript | C11G6.1a.1 | ||||||||
| C11G6.1b.1 | |||||||||
| C11G6.1c.1 | |||||||||
| C11G6.1d.1 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature (18) | |||||||||
| Transcription_factor | WBTranscriptionFactor000410 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040358 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010627 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040360 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011626 | ||||||||
| Expr1032581 | |||||||||
| Expr1144424 | |||||||||
| Expr2017213 | |||||||||
| Expr2035349 | |||||||||
| Drives_construct | WBCnstr00033678 | ||||||||
| Construct_product | WBCnstr00033678 | ||||||||
| Microarray_results (41) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction | WBInteraction000216785 | ||||||||
| WBInteraction000292069 | |||||||||
| WBInteraction000356608 | |||||||||
| WBInteraction000412619 | |||||||||
| WBInteraction000559847 | |||||||||
| WBInteraction000574057 | |||||||||
| Map_info | Map | X | Position | 23.7856 | Error | 0.022658 | |||
| Positive | Positive_clone | C11G6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00029038 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | The previous taf-3 gene is now called taf-6.1, 02/06/14 krb. | ||||||||
| Sequence connection from [Blackwell TK], 02/06/14 krb. | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
