WormBase Tree Display for Gene: WBGene00006396
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| WBGene00006396 | SMap | S_parent | Sequence | Y56A3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | taf-12 | |||||||
| Sequence_name | Y56A3A.4 | ||||||||
| Molecular_name | Y56A3A.4a | ||||||||
| Y56A3A.4a.1 | |||||||||
| CE31842 | |||||||||
| Y56A3A.4b | |||||||||
| CE43550 | |||||||||
| Y56A3A.4b.1 | |||||||||
| Other_name | CELE_Y56A3A.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | taf-12 | ||||||||
| DB_info | Database | AceView | gene | 3M952 | |||||
| WormQTL | gene | WBGene00006396 | |||||||
| WormFlux | gene | WBGene00006396 | |||||||
| NDB | locus_tag | CELE_Y56A3A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006396|UniProtKB=Q9U226 | |||||||
| family | PTHR12264 | ||||||||
| NCBI | gene | 176617 | |||||||
| RefSeq | protein | NM_001268215.4 | |||||||
| NM_001268216.3 | |||||||||
| SwissProt | UniProtAcc | Q9U226 | |||||||
| TREEFAM | TREEFAM_ID | TF321642 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U226 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | taf | ||||||||
| Allele (256) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3732 | ||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00004116 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | taf-12 encodes a homolog of transcription initiation factor TFIID 20/15 kDa subunits (TAFII-20/TAFII-15) with a glutamine/asparagine-rich N-terminal domain and a a TFIID-like C-terminal domain. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Located in nucleus. Is an ortholog of human TAF12 (TATA-box binding protein associated factor 12). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y56A3A.4a | |||||||
| Y56A3A.4b | |||||||||
| Corresponding_CDS_history | Y56A3A.4:wp85 | ||||||||
| Corresponding_transcript | Y56A3A.4a.1 | ||||||||
| Y56A3A.4b.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf667464 | ||||||||
| WBsf994513 | |||||||||
| WBsf994514 | |||||||||
| WBsf994515 | |||||||||
| WBsf1016097 | |||||||||
| WBsf1016098 | |||||||||
| WBsf1016099 | |||||||||
| WBsf227609 | |||||||||
| Transcription_factor | WBTranscriptionFactor000206 | ||||||||
| WBTranscriptionFactor000575 | |||||||||
| WBTranscriptionFactor000620 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1016553 | ||||||||
| Expr1032593 | |||||||||
| Expr1161020 | |||||||||
| Expr2017209 | |||||||||
| Expr2035345 | |||||||||
| Construct_product | WBCnstr00005319 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction (117) | |||||||||
| Map_info | Map | III | Position | 13.2826 | Error | 0.002751 | |||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y56A4 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004890 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029038 | |||||||||
| WBPaper00032265 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Sequence connection from [source: A Walker] | ||||||||
| The gene was previously called taf-9, [krb 020614]. | |||||||||
| Sequence connection updated by [Hodgkin J], [krb 020614] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
