WormBase Tree Display for Gene: WBGene00006428
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| WBGene00006428 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | AC7 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | tkr-3 | Person_evidence | WBPerson260 | |||||
| Sequence_name | AC7.1 | ||||||||
| Molecular_name | AC7.1a | ||||||||
| AC7.1a.1 | |||||||||
| CE52369 | |||||||||
| AC7.1b | |||||||||
| CE52241 | |||||||||
| AC7.1b.1 | |||||||||
| Other_name | tag-49 | Person_evidence | WBPerson201 | ||||||
| CELE_AC7.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | tkr-3 | ||||||||
| DB_info | Database | AceView | gene | 4F878 | |||||
| WormQTL | gene | WBGene00006428 | |||||||
| WormFlux | gene | WBGene00006428 | |||||||
| NDB | locus_tag | CELE_AC7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006428|UniProtKB=Q58AU0 | |||||||
| family | PTHR24238 | ||||||||
| NCBI | gene | 177285 | |||||||
| RefSeq | protein | NM_001356921.4 | |||||||
| NM_001356922.2 | |||||||||
| TrEMBL | UniProtAcc | Q58AU0 | |||||||
| Q58AU1 | |||||||||
| UniProt_GCRP | UniProtAcc | Q58AU0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 17 Feb 2012 16:50:20 | WBPerson2970 | Name_change | CGC_name | tkr-3 | ||||
| Other_name | tag-49 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tkr | ||||||||
| Allele (106) | |||||||||
| Strain | WBStrain00001797 | ||||||||
| WBStrain00035632 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (29) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Automated_description | Predicted to enable neuropeptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to be located in membrane. Expressed in tail. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | AC7.1a | |||||||
| AC7.1b | |||||||||
| Corresponding_CDS_history | AC7.1:wp89 | ||||||||
| AC7.1:wp141 | |||||||||
| AC7.1a:wp261 | |||||||||
| AC7.1b:wp261 | |||||||||
| Corresponding_transcript | AC7.1a.1 | ||||||||
| AC7.1b.1 | |||||||||
| Other_sequence | JI227900.1 | ||||||||
| Tcol_isotig09424 | |||||||||
| JO473231.1 | |||||||||
| PP00008 | |||||||||
| JI179412.1 | |||||||||
| Tcol_isotig09425 | |||||||||
| Dviv_isotig27195 | |||||||||
| FG586871.1 | |||||||||
| Associated_feature | WBsf651789 | ||||||||
| WBsf667929 | |||||||||
| WBsf667930 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00085528 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027920 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038601 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024343 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001811 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072189 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram291 | ||||||||
| Expr5001 | |||||||||
| Expr1018861 | |||||||||
| Expr1142809 | |||||||||
| Expr2017413 | |||||||||
| Expr2035552 | |||||||||
| Drives_construct | WBCnstr00002598 | ||||||||
| WBCnstr00037910 | |||||||||
| Construct_product | WBCnstr00037910 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | IV | Position | 1.45883 | Error | 0.004887 | |||
| Positive | Positive_clone | AC7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4954 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025614 | ||||||||
| WBPaper00032196 | |||||||||
| WBPaper00035228 | |||||||||
| WBPaper00052567 | |||||||||
| WBPaper00061368 | |||||||||
| WBPaper00065946 | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
