WormBase Tree Display for Gene: WBGene00006478

WBGene00006478 SMap: S_parent: Sequence: H38K22
  Identity: Version: 1
    Name: CGC_name: tag-131 Person_evidence: WBPerson201
      Sequence_name: H38K22.3
      Molecular_name: H38K22.3
        H38K22.3.1
        CE18831
      Other_name: CELE_H38K22.3 Accession_evidence: NDB BX284603
      Public_name: tag-131
    DB_info: Database: AceView gene 3F409
        WormQTL gene WBGene00006478
        WormFlux gene WBGene00006478
        NDB locus_tag CELE_H38K22.3
        Panther gene CAEEL|WormBase=WBGene00006478|UniProtKB=Q9XXA7
          family PTHR10281
        NCBI gene 175557
        RefSeq protein NM_065467.5
        SwissProt UniProtAcc Q9XXA7
        TREEFAM TREEFAM_ID TF313943
        UniProt_GCRP UniProtAcc Q9XXA7
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tag
    Allele (27)
    Strain: WBStrain00035780
    RNASeq_FPKM (74)
    GO_annotation: 00104212
      00104213
      00104214
      00104215
    Contained_in_operon: CEOP3172
    Ortholog (35)
    Paralog: WBGene00006890 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012559 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in endomembrane system and membrane. Is an ortholog of human CYB5D2 (cytochrome b5 domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H38K22.3
    Corresponding_transcript: H38K22.3.1
    Other_sequence (39)
    Associated_feature: WBsf992087
      WBsf992088
      WBsf1014736
      WBsf1014737
      WBsf224710
  Experimental_info: RNAi_result: WBRNAi00016346 Inferred_automatically: RNAi_primary
      WBRNAi00033782 Inferred_automatically: RNAi_primary
      WBRNAi00049548 Inferred_automatically: RNAi_primary
      WBRNAi00076529 Inferred_automatically: RNAi_primary
      WBRNAi00005538 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016979
      Expr1032647
      Expr1153271
      Expr2017227
      Expr2035363
    Microarray_results (20)
    Expression_cluster (70)
    SAGE_tag: SAGE:agtcgttgcaatcagcc Strand: Antisense
      SAGE:atgaattgctatcaatc Strand: Sense
        Unambiguously_mapped
      SAGE:aaaacctaac Strand: Antisense
      SAGE:tatctttttg Strand: Sense
        Unambiguously_mapped
      SAGE:atgaattgct Strand: Sense
        Unambiguously_mapped
      SAGE:aaaacctaacaaggaat Strand: Antisense
      SAGE:taatatcaac Strand: Sense
        Unambiguously_mapped
      SAGE:tatctttttgaaaaata Strand: Sense
        Unambiguously_mapped
      SAGE:cgtcaaaaat Strand: Sense
        Unambiguously_mapped
      SAGE:cgtcaaaaatttcggtc Strand: Sense
        Unambiguously_mapped
    Interaction: WBInteraction000297715
      WBInteraction000328063
      WBInteraction000374611
      WBInteraction000399497
      WBInteraction000552073
      WBInteraction000563303
      WBInteraction000564329
      WBInteraction000579830
  Map_info: Map: III Position: -3.1914 Error: 0.000998
    Positive: Positive_clone: H38K22 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061547
    WBPaper00065080
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene