WormBase Tree Display for Gene: WBGene00006493
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| WBGene00006493 | SMap | S_parent | Sequence | R09A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ivns-1 | Person_evidence | WBPerson293 | |||||
| Sequence_name | R09A8.3 | ||||||||
| Molecular_name | R09A8.3 | ||||||||
| R09A8.3.1 | |||||||||
| CE03539 | |||||||||
| R09A8.3.2 | |||||||||
| Other_name | tag-147 | Person_evidence | WBPerson201 | ||||||
| CELE_R09A8.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ivns-1 | ||||||||
| DB_info | Database | AceView | gene | XN244 | |||||
| WormQTL | gene | WBGene00006493 | |||||||
| WormFlux | gene | WBGene00006493 | |||||||
| NDB | locus_tag | CELE_R09A8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006493|UniProtKB=Q21854 | |||||||
| family | PTHR24412 | ||||||||
| NCBI | gene | 181410 | |||||||
| RefSeq | protein | NM_077708.9 | |||||||
| TrEMBL | UniProtAcc | Q21854 | |||||||
| UniProt_GCRP | UniProtAcc | Q21854 | |||||||
| OMIM | gene | 609209 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 11 Oct 2017 16:33:09 | WBPerson1983 | Name_change | CGC_name | ivns-1 | ||||
| Other_name | tag-147 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ivns | ||||||||
| Allele (189) | |||||||||
| Strain | WBStrain00002827 | ||||||||
| WBStrain00033011 | |||||||||
| WBStrain00035813 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (34) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Automated_description | Enriched in body wall musculature; intestine; neurons; pharynx; and somatic gonad precursor based on Chronogram; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and daf-12 based on tiling array; proteomic; RNA-seq; and microarray studies. Is affected by ten chemicals including stavudine; Tunicamycin; and bortezomib based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in immunodeficiency 70. Is predicted to encode a protein with the following domains: Galactose oxidase/kelch, beta-propeller; Kelch-type beta propeller; Kelch motif; SKP1/BTB/POZ domain superfamily; Kelch repeat type 1; BTB/POZ domain; and BTB/Kelch-associated. Is an ortholog of human IVNS1ABP (influenza virus NS1A binding protein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112005 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16951) | ||||
| Molecular_info | Corresponding_CDS | R09A8.3 | |||||||
| Corresponding_transcript | R09A8.3.1 | ||||||||
| R09A8.3.2 | |||||||||
| Other_sequence (55) | |||||||||
| Associated_feature (18) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017621 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034761 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051584 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000350 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1704 | ||||||||
| Expr1016812 | |||||||||
| Expr1032656 | |||||||||
| Expr1155256 | |||||||||
| Expr2017229 | |||||||||
| Expr2035365 | |||||||||
| Drives_construct | WBCnstr00003352 | ||||||||
| WBCnstr00034338 | |||||||||
| Construct_product | WBCnstr00034338 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (172) | |||||||||
| Interaction | WBInteraction000282181 | ||||||||
| WBInteraction000376618 | |||||||||
| WBInteraction000538932 | |||||||||
| WBInteraction000551487 | |||||||||
| WBInteraction000557847 | |||||||||
| WBInteraction000568464 | |||||||||
| WBInteraction000571931 | |||||||||
| WBInteraction000573593 | |||||||||
| WBInteraction000579706 | |||||||||
| Map_info | Map | X | Position | 7.26648 | Error | 0.059523 | |||
| Positive | Positive_clone | R09A8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055785 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
