WormBase Tree Display for Gene: WBGene00006513
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| WBGene00006513 | SMap | S_parent | Sequence | Y39A3CL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rimb-1 | Person_evidence | WBPerson298 | |||||
| Sequence_name | Y39A3CL.2 | ||||||||
| Molecular_name | Y39A3CL.2 | ||||||||
| Y39A3CL.2.1 | |||||||||
| CE50987 | |||||||||
| Y39A3CL.2.2 | |||||||||
| Other_name | tag-168 | Person_evidence | WBPerson201 | ||||||
| CELE_Y39A3CL.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | rimb-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 25 Oct 2013 11:47:12 | WBPerson2970 | Name_change | CGC_name | rimb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rimb | ||||||||
| Allele (513) | |||||||||
| Strain | WBStrain00035856 | ||||||||
| WBStrain00023504 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094152 | ||||||||
| 00094153 | |||||||||
| 00094154 | |||||||||
| Ortholog (47) | |||||||||
| Structured_description | Concise_description | rimb-1 encodes the C. elegans ortholog of the vertebrate RIM-BP2 RIM (Rab3-interacting protein) binding proteins; rimb-1 is expressed pan-neuronally. | Paper_evidence | WBPaper00033058 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Oct 2013 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in neuromuscular synaptic transmission. Predicted to be located in synapse. Expressed in dorsal nerve cord; head ganglion; nervous system; tail ganglion; and ventral nerve cord. Human ortholog(s) of this gene implicated in dystonia. Is an ortholog of human RIMBP2 (RIMS binding protein 2) and TSPOAP1 (TSPO associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:543 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16831) | ||||
| Molecular_info | Corresponding_CDS | Y39A3CL.2 | |||||||
| Corresponding_CDS_history | Y39A3CL.2:wp187 | ||||||||
| Y39A3CL.2:wp249 | |||||||||
| Corresponding_transcript | Y39A3CL.2.1 | ||||||||
| Y39A3CL.2.2 | |||||||||
| Other_sequence (63) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056143 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007074 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14879 | ||||||||
| Expr14880 | |||||||||
| Expr15430 | |||||||||
| Expr1011677 | |||||||||
| Expr1032668 | |||||||||
| Expr1159655 | |||||||||
| Expr2015359 | |||||||||
| Expr2033593 | |||||||||
| Drives_construct | WBCnstr00009712 | ||||||||
| WBCnstr00009713 | |||||||||
| WBCnstr00009716 | |||||||||
| WBCnstr00009717 | |||||||||
| WBCnstr00009720 | |||||||||
| WBCnstr00009721 | |||||||||
| WBCnstr00018068 | |||||||||
| WBCnstr00041567 | |||||||||
| WBCnstr00042091 | |||||||||
| Construct_product | WBCnstr00041568 | ||||||||
| WBCnstr00041569 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (159) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | III | Position | -16.1118 | Error | 0.246334 | |||
| Positive | Positive_clone | Y39A3CL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4597 | |||||||
| 4656 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
