WormBase Tree Display for Gene: WBGene00006522
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| WBGene00006522 | SMap | S_parent | Sequence | C56E6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | abcx-1 | Paper_evidence | WBPaper00028961 | |||||
| Sequence_name | C56E6.1 | ||||||||
| Molecular_name | C56E6.1 | ||||||||
| C56E6.1.1 | |||||||||
| CE47924 | |||||||||
| Other_name | tag-177 | Person_evidence | WBPerson201 | ||||||
| CELE_C56E6.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | abcx-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Oct 2005 17:16:52 | WBPerson2970 | Event | Acquires_merge | WBGene00016969 | ||||
| Name_change | Sequence_name | C56E6.1 | |||||||
| 3 | 21 Jun 2007 14:37:04 | WBPerson2970 | Name_change | CGC_name | abcx-1 | ||||
| 4 | 06 May 2010 09:52:41 | WBPerson1867 | Event | Split_into | WBGene00195085 | ||||
| Acquires_merge | WBGene00016969 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abcx | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00035882 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007792 | ||||||||
| 00007793 | |||||||||
| 00007794 | |||||||||
| 00007795 | |||||||||
| 00007796 | |||||||||
| 00007797 | |||||||||
| 00114182 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00007631 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008950 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007513 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021535 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017179 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016973 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Involved in positive regulation of nematode male tail tip morphogenesis. Predicted to be located in membrane. Expressed in hyp11; hyp8; and hyp9. Human ortholog(s) of this gene implicated in several diseases, including arteriosclerosis; obesity; and sitosterolemia. Is an ortholog of human ABCG8 (ATP binding cassette subfamily G member 8). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0700225 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13887) | ||||
| DOID:9970 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13887) | ||||||
| DOID:2349 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13887) | ||||||
| DOID:0090019 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13887) | ||||||
| DOID:1168 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13887) | ||||||
| Molecular_info | Corresponding_CDS | C56E6.1 | |||||||
| Corresponding_CDS_history | C56E6.1:wp214 | ||||||||
| C56E6.1:wp234 | |||||||||
| Corresponding_transcript | C56E6.1.1 | ||||||||
| Associated_feature | WBsf644302 | ||||||||
| Experimental_info | Expr_pattern | Expr11061 | |||||||
| Expr1019682 | |||||||||
| Expr1147254 | |||||||||
| Expr2009078 | |||||||||
| Expr2027314 | |||||||||
| Drives_construct | WBCnstr00008168 | ||||||||
| Construct_product | WBCnstr00008168 | ||||||||
| Microarray_results | GPL14144_C56E6.1_1043-1102_0.797_148_A | ||||||||
| GPL14144_C56E6.1_324-383_0.786_170_B | |||||||||
| GPL14144_C56E6.1_667-726_0.790_162_C | |||||||||
| GPL19516_CGZ0010870 | |||||||||
| GPL21109_C56E6.1 | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (39) | |||||||||
| Map_info | Map | II | Position | -0.177788 | Error | 0.007888 | |||
| Positive | Positive_clone | C56E6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5584 | |||||||
| 5596 | |||||||||
| 4648 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015815 | ||||||||
| WBPaper00027644 | |||||||||
| WBPaper00029435 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
