WormBase Tree Display for Gene: WBGene00006535
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| WBGene00006535 | SMap | S_parent | Sequence | F40F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tba-9 | |||||||
| Sequence_name | F40F4.5 | ||||||||
| Molecular_name | F40F4.5 | ||||||||
| F40F4.5.1 | |||||||||
| CE30131 | |||||||||
| Other_name | CELE_F40F4.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | tba-9 | ||||||||
| DB_info | Database | AceView | gene | XD873 | |||||
| WormQTL | gene | WBGene00006535 | |||||||
| WormFlux | gene | WBGene00006535 | |||||||
| NDB | locus_tag | CELE_F40F4.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006535|UniProtKB=Q20221 | |||||||
| family | PTHR11588 | ||||||||
| NCBI | gene | 185538 | |||||||
| RefSeq | protein | NM_076154.6 | |||||||
| TrEMBL | UniProtAcc | Q20221 | |||||||
| UniProt_GCRP | UniProtAcc | Q20221 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tba | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00032241 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (40) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Concise_description | tba-9 encodes one of nine C. elegans alpha tubulins; by homology, TBA-9 is predicted to be a component of microtubules; as loss of tba-9 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, TBA-9 likely functions redundantly with other alpha tubulins as a basic component of cellular architecture that may play additional roles in processes such as cell division, cell movement, and intracellular transport. | Paper_evidence | WBPaper00003909 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to be located in cytoplasm and microtubule. Expressed in RIG; accessory cell; ciliated neurons; ventral cord neurons; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F4.5 | |||||||
| Corresponding_transcript | F40F4.5.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf647920 | ||||||||
| WBsf662587 | |||||||||
| WBsf662588 | |||||||||
| WBsf1004567 | |||||||||
| WBsf1004568 | |||||||||
| WBsf1004569 | |||||||||
| WBsf1022591 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014659 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00086507 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046868 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076402 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9261 | ||||||||
| Expr9264 | |||||||||
| Expr1022380 | |||||||||
| Expr1032684 | |||||||||
| Expr1150734 | |||||||||
| Expr2017316 | |||||||||
| Expr2035451 | |||||||||
| Drives_construct | WBCnstr00006120 | ||||||||
| WBCnstr00006121 | |||||||||
| WBCnstr00006862 | |||||||||
| WBCnstr00006864 | |||||||||
| WBCnstr00006867 | |||||||||
| WBCnstr00009417 | |||||||||
| WBCnstr00013860 | |||||||||
| WBCnstr00013862 | |||||||||
| WBCnstr00034318 | |||||||||
| WBCnstr00038230 | |||||||||
| Construct_product | WBCnstr00006862 | ||||||||
| WBCnstr00013862 | |||||||||
| WBCnstr00034318 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (166) | |||||||||
| Interaction (47) | |||||||||
| Map_info | Map | X | Position | -10.6763 | Error | 0.030549 | |||
| Positive | Positive_clone | F40F4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Sequence connection from [Gogonea CB, Siddiqui SS] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
