WormBase Tree Display for Gene: WBGene00006703
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| WBGene00006703 | SMap | S_parent | Sequence | D1022 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ubc-6 | Person_evidence | WBPerson89 | |||||
| Sequence_name | D1022.1 | ||||||||
| Molecular_name | D1022.1a | ||||||||
| D1022.1a.1 | |||||||||
| CE29241 | |||||||||
| D1022.1b | |||||||||
| CE39712 | |||||||||
| D1022.1b.1 | |||||||||
| Other_name | CELE_D1022.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ubc-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubc | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00037824 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005625 | ||||||||
| 00005626 | |||||||||
| 00005627 | |||||||||
| 00005628 | |||||||||
| 00005629 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | ubc-6 encodes an E2 ubiquitin-conjugating enzyme; by homology, UBC-6 is predicted to function in the covalent attachment of ubiquitin molecules to protein substrates via its association with an E3 ubiquitin-protein ligase; loss of ubc-6 activity via large-scale RNAi screens results in no obvious abnormalities. | Paper_evidence | WBPaper00005337 | |||||
| WBPaper00027315 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 30 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to be located in nucleus. Expressed in germ line and oocyte. Is an ortholog of human UBE2J1 (ubiquitin conjugating enzyme E2 J1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1022.1a | |||||||
| D1022.1b | |||||||||
| Corresponding_CDS_history | D1022.1:wp154 | ||||||||
| Corresponding_transcript | D1022.1a.1 | ||||||||
| D1022.1b.1 | |||||||||
| Other_sequence (63) | |||||||||
| Associated_feature | WBsf644379 | ||||||||
| WBsf644380 | |||||||||
| WBsf981225 | |||||||||
| WBsf988456 | |||||||||
| WBsf1012543 | |||||||||
| WBsf221598 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043349 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076255 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030323 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012502 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082823 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9709 | ||||||||
| Expr1015023 | |||||||||
| Expr1032786 | |||||||||
| Expr1147328 | |||||||||
| Expr2017714 | |||||||||
| Expr2035852 | |||||||||
| Drives_construct | WBCnstr00034203 | ||||||||
| Construct_product | WBCnstr00034203 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction | WBInteraction000185909 | ||||||||
| WBInteraction000279554 | |||||||||
| WBInteraction000381688 | |||||||||
| WBInteraction000390377 | |||||||||
| WBInteraction000392701 | |||||||||
| WBInteraction000402021 | |||||||||
| WBInteraction000418549 | |||||||||
| WBInteraction000505048 | |||||||||
| Map_info | Map | II | Position | 0.503258 | Error | 2.4e-05 | |||
| Positive | Positive_clone | D1022 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005337 | ||||||||
| WBPaper00027315 | |||||||||
| WBPaper00033175 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060630 | |||||||||
| Remark | Sequence connection from [Jones D, Crowe E, Stevens TA, Candido EPM], 02/06/10 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
