WormBase Tree Display for Gene: WBGene00006886
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| WBGene00006886 | SMap | S_parent | Sequence | F11C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | vap-1 | Person_evidence | WBPerson381 | |||||
| Sequence_name | F11C7.3 | ||||||||
| Molecular_name | F11C7.3 | ||||||||
| F11C7.3.1 | |||||||||
| CE30944 | |||||||||
| Other_name | CELE_F11C7.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | vap-1 | ||||||||
| DB_info | Database | AceView | gene | XS8 | |||||
| WormQTL | gene | WBGene00006886 | |||||||
| WormFlux | gene | WBGene00006886 | |||||||
| NDB | locus_tag | CELE_F11C7.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006886|UniProtKB=Q19348 | |||||||
| family | PTHR10334 | ||||||||
| NCBI | gene | 181768 | |||||||
| RefSeq | protein | NM_001029382.3 | |||||||
| TrEMBL | UniProtAcc | Q8MQ79 | |||||||
| UniProt_GCRP | UniProtAcc | Q8MQ79 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vap | ||||||||
| Allele (39) | |||||||||
| Strain | WBStrain00035600 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084512 | ||||||||
| Ortholog (29) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Concise_description | vap-1 encodes a predicted secreted protein that is similar to the venom allergen-like proteins found in a number of invertebrates, including parasitic nematodes; a vap-1 reporter fusion is expressed specifically within the amphid sheath cells. | Paper_evidence | WBPaper00013266 | |||||
| WBPaper00025237 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Oct 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be located in extracellular space. Expressed in amphid sheath cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F11C7.3 | |||||||
| Corresponding_CDS_history | F11C7.3a:wp271 | ||||||||
| Corresponding_transcript | F11C7.3.1 | ||||||||
| Other_sequence (95) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044371 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002205 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027878 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078342 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013120 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12937 | ||||||||
| Expr1020466 | |||||||||
| Expr1148314 | |||||||||
| Expr2017960 | |||||||||
| Expr2036096 | |||||||||
| Drives_construct | WBCnstr00005405 | ||||||||
| WBCnstr00005603 | |||||||||
| WBCnstr00009472 | |||||||||
| WBCnstr00009478 | |||||||||
| WBCnstr00009487 | |||||||||
| WBCnstr00017955 | |||||||||
| WBCnstr00034114 | |||||||||
| Construct_product | WBCnstr00009489 | ||||||||
| WBCnstr00034114 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (181) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | X | Position | 24.0893 | Error | 0.000509 | |||
| Positive | Positive_clone | F11C7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4748 | |||||||
| 5259 | |||||||||
| 5589 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010858 | ||||||||
| WBPaper00017646 | |||||||||
| WBPaper00027214 | |||||||||
| WBPaper00033394 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048405 | |||||||||
| WBPaper00049847 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
