WormBase Tree Display for Gene: WBGene00007048

WBGene00007048 SMap: S_parent: Sequence: C16A3
  Identity: Version: 3
    Name: CGC_name: nfx-1 Person_evidence: WBPerson260
      Sequence_name: C16A3.7
      Molecular_name: C16A3.7
        C16A3.7.1
        CE04007
      Other_name: tag-182 Person_evidence: WBPerson201
        CELE_C16A3.7 Accession_evidence: NDB BX284603
      Public_name: nfx-1
    DB_info: Database: AceView gene 3H467
        WormQTL gene WBGene00007048
        WormFlux gene WBGene00007048
        NDB locus_tag CELE_C16A3.7
        Panther gene CAEEL|WormBase=WBGene00007048|UniProtKB=Q18034
          family PTHR12360
        NCBI gene 175902
        RefSeq protein NM_065993.8
        SwissProt UniProtAcc Q18034
        TREEFAM TREEFAM_ID TF105889
        UniProt_GCRP UniProtAcc Q18034
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 13:09:06 WBPerson1845 Event: Created
        2 05 Oct 2005 17:16:53 WBPerson2970 Event: Acquires_merge: WBGene00015812
              Name_change: Sequence_name: C16A3.7
        3 23 Sep 2011 16:19:55 WBPerson2970 Name_change: CGC_name: nfx-1
                Other_name: tag-182
      Acquires_merge: WBGene00015812
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nfx
    Allele (47)
    Strain: WBStrain00035903
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP3364
    Ortholog (37)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is an ortholog of human NFX1 (nuclear transcription factor, X-box binding 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C16A3.7
    Corresponding_transcript: C16A3.7.1
    Other_sequence (34)
    Associated_feature: WBsf645263
      WBsf978634
      WBsf981495
      WBsf225090
      WBsf225091
    Transcription_factor: WBTranscriptionFactor000725
  Experimental_info: RNAi_result: WBRNAi00010818 Inferred_automatically: RNAi_primary
      WBRNAi00040663 Inferred_automatically: RNAi_primary
      WBRNAi00005189 Inferred_automatically: RNAi_primary
      WBRNAi00008054 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028812
      Expr1033026
      Expr1144712
      Expr2013987
      Expr2032227
    Drives_construct: WBCnstr00037876
    Construct_product: WBCnstr00018629
      WBCnstr00037876
    Microarray_results (20)
    Expression_cluster (137)
    Interaction (129)
  Map_info: Map: III Position: -1.31955 Error: 0.004331
    Positive: Positive_clone: C16A3 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5627
        4991
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00038491
    WBPaper00055090
    WBPaper00058224
    WBPaper00064789
  Remark: tag-182 is parsed from CGC strain VC594
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    Please note that this publication erreneously cited nfx-1. The correct gene is nxf-1. Paper_evidence: WBPaper00041879
  Method: Gene