WormBase Tree Display for Gene: WBGene00007194
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| WBGene00007194 | SMap | S_parent | Sequence | B0491 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dph-5 | Person_evidence | WBPerson3778 | |||||
| Sequence_name | B0491.7 | ||||||||
| Molecular_name | B0491.7 | ||||||||
| B0491.7.1 | |||||||||
| CE02109 | |||||||||
| Other_name | CELE_B0491.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | dph-5 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Jun 2021 18:11:09 | WBPerson1983 | Name_change | CGC_name | dph-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dph | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00058310 | ||||||||
| 00058311 | |||||||||
| 00058312 | |||||||||
| 00058313 | |||||||||
| 00115413 | |||||||||
| 00115414 | |||||||||
| 00115415 | |||||||||
| Contained_in_operon | CEOP2532 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Concise_description | B0491.7 encodes a putative diphthine synthase orthologous to S. cerevisiae DPH5; DPH5 is an S-adenosylmethionine:EF-2 methyltransferase required for the enzymatic conversion of 3-amino-3-carboxypropyl-histidine to diphthine; DPH5 adds at least the last two of the three methyl groups present in diphthine, and is homologous to bacterial AdoMet:uroporphyrinogen III methyltransferases. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00012895 | |||||||||
| WBPaper00013419 | |||||||||
| WBPaper00013534 | |||||||||
| WBPaper00013537 | |||||||||
| WBPaper00013539 | |||||||||
| WBPaper00013556 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable diphthine synthase activity. Predicted to be involved in methylation and protein histidyl modification to diphthamide. Is an ortholog of human DPH5 (diphthamide biosynthesis 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070479 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24270) | ||||
| Molecular_info | Corresponding_CDS | B0491.7 | |||||||
| Corresponding_transcript | B0491.7.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf989723 | ||||||||
| WBsf989724 | |||||||||
| WBsf1013217 | |||||||||
| WBsf1013218 | |||||||||
| WBsf222128 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061719 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039105 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009805 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028169 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026360 | ||||||||
| Expr1033100 | |||||||||
| Expr1143263 | |||||||||
| Expr2000207 | |||||||||
| Expr2018427 | |||||||||
| Drives_construct | WBCnstr00033929 | ||||||||
| Construct_product | WBCnstr00033929 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (112) | |||||||||
| SAGE_tag | SAGE:aatgcagttggctgttg | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcgacttcca | Strand | Antisense | |||||||
| SAGE:ttggaaactttcaggcc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ttggaaactt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (88) | |||||||||
| Map_info | Map | II | Position | 3.45336 | |||||
| Positive | Positive_clone | B0491 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
