WormBase Tree Display for Gene: WBGene00007221
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| WBGene00007221 | SMap | S_parent | Sequence | C01F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpna-3 | Person_evidence | WBPerson56 | |||||
| Sequence_name | C01F6.1 | ||||||||
| Molecular_name | C01F6.1 | ||||||||
| C01F6.1.1 | |||||||||
| CE49698 | |||||||||
| Other_name | CELE_C01F6.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cpna-3 | ||||||||
| DB_info | Database | AceView | gene | 4J863 | |||||
| 4J865 | |||||||||
| WormQTL | gene | WBGene00007221 | |||||||
| WormFlux | gene | WBGene00007221 | |||||||
| NDB | locus_tag | CELE_C01F6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007221|UniProtKB=Q17559 | |||||||
| family | PTHR10857 | ||||||||
| NCBI | gene | 3565393 | |||||||
| RefSeq | protein | NM_069183.7 | |||||||
| TrEMBL | UniProtAcc | Q17559 | |||||||
| UniProt_GCRP | UniProtAcc | Q17559 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Apr 2009 16:04:55 | WBPerson9133 | Name_change | CGC_name | cpna-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpna | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00031710 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00058507 | ||||||||
| 00058508 | |||||||||
| 00058509 | |||||||||
| 00115431 | |||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00001577 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006441 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007044 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012128 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015061 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cpna-3 encodes a putative calcium-dependent phospholipid bindingprotein of the copine family; cpna-3 is required for sperm to normallymigrate towards a PUFA-based signal exuded by oocytes; cpna-3(RNAi)hermaphrodites are infertile, both through aberrant loss of their ownsperm and through failure of males to effectively inseminate them. | Paper_evidence | WBPaper00028527 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be located in plasma membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C01F6.1 | |||||||
| Corresponding_CDS_history | C01F6.1:wp242 | ||||||||
| Corresponding_transcript | C01F6.1.1 | ||||||||
| Other_sequence | Oden_isotig19174 | ||||||||
| CJC10806_1 | |||||||||
| CRC10273_1 | |||||||||
| CR04443 | |||||||||
| CGC00373_1 | |||||||||
| Dviv_isotig23501 | |||||||||
| Associated_feature | WBsf646212 | ||||||||
| WBsf646213 | |||||||||
| WBsf977230 | |||||||||
| WBsf977231 | |||||||||
| WBsf977232 | |||||||||
| WBsf228782 | |||||||||
| WBsf228783 | |||||||||
| WBsf228784 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00065635 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028284 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039310 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009918 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062099 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065301 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015893 | ||||||||
| Expr1033114 | |||||||||
| Expr1143423 | |||||||||
| Expr2010499 | |||||||||
| Expr2028739 | |||||||||
| Drives_construct | WBCnstr00033910 | ||||||||
| Construct_product | WBCnstr00033910 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | IV | Position | 4.041 | |||||
| Positive | Positive_clone | C01F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028527 | ||||||||
| WBPaper00035008 | |||||||||
| WBPaper00062625 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
