WormBase Tree Display for Gene: WBGene00007416
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WBGene00007416 | SMap | S_parent | Sequence | C07E3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | ceh-57 | Person_evidence | WBPerson83 | |||
Sequence_name | C07E3.5 | ||||||
Molecular_name | C07E3.5 | ||||||
C07E3.5.1 | |||||||
CE42522 | |||||||
C07E3.5.2 | |||||||
C07E3.5.3 | |||||||
Other_name | ceh-52 | Person_evidence | WBPerson261 | ||||
WBPerson83 | |||||||
CELE_C07E3.5 | Accession_evidence | NDB | BX284602 | ||||
Public_name | ceh-57 | ||||||
DB_info | Database | AceView | gene | 2K654 | |||
WormQTL | gene | WBGene00007416 | |||||
WormFlux | gene | WBGene00007416 | |||||
NDB | locus_tag | CELE_C07E3.5 | |||||
NCBI | gene | 182370 | |||||
RefSeq | protein | NM_063831.6 | |||||
TrEMBL | UniProtAcc | Q17788 | |||||
UniProt_GCRP | UniProtAcc | Q17788 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ceh | ||||||
Allele (77) | |||||||
Strain | WBStrain00003389 | ||||||
WBStrain00036393 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00059205 | ||||||
00059206 | |||||||
00059207 | |||||||
00059208 | |||||||
00059209 | |||||||
00059210 | |||||||
00059211 | |||||||
00059212 | |||||||
00115544 | |||||||
Ortholog | chrII_pilon.g5716 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | ceh-57 is a divergent homeobox gene that encodes one homeodomain; most homeodomain proteins bind DNA and function as transcription factors; ceh-57 is expressed in the nervous system and the intestine. | Paper_evidence | WBPaper00046864 | |||
WBPaper00006525 | |||||||
WBPaper00029055 | |||||||
WBPaper00030839 | |||||||
WBPaper00037950 | |||||||
WBPaper00041419 | |||||||
Person_evidence | WBPerson83 | ||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 20 Apr 2017 00:00:00 | ||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in amphid neurons; intestine; neuroblasts; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C07E3.5 | |||||
Corresponding_CDS_history | C07E3.5:wp189 | ||||||
Corresponding_transcript | C07E3.5.1 | ||||||
C07E3.5.2 | |||||||
C07E3.5.3 | |||||||
Associated_feature | WBsf978717 | ||||||
WBsf223787 | |||||||
WBsf223788 | |||||||
Transcription_factor | WBTranscriptionFactor000763 | ||||||
Experimental_info | RNAi_result | WBRNAi00092050 | Inferred_automatically | RNAi_primary | |||
WBRNAi00010391 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010393 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040003 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (11) | |||||||
Drives_construct | WBCnstr00003858 | ||||||
WBCnstr00012562 | |||||||
WBCnstr00033754 | |||||||
WBCnstr00041957 | |||||||
Construct_product | WBCnstr00017325 | ||||||
WBCnstr00033754 | |||||||
WBCnstr00041957 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (91) | |||||||
Interaction | WBInteraction000443745 | ||||||
WBInteraction000519930 | |||||||
Map_info | Map | II | Position | 2.47257 | Error | 0.010552 | |
Positive | Positive_clone | C07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00060123 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |