WormBase Tree Display for Gene: WBGene00007554
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| WBGene00007554 | SMap | S_parent | Sequence | C13G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pptr-2 | Person_evidence | WBPerson1826 | |||||
| Sequence_name | C13G3.3 | ||||||||
| Molecular_name (17) | |||||||||
| Other_name | CELE_C13G3.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pptr-2 | ||||||||
| DB_info | Database | AceView | gene | 5L508 | |||||
| WormQTL | gene | WBGene00007554 | |||||||
| WormFlux | gene | WBGene00007554 | |||||||
| NDB | locus_tag | CELE_C13G3.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007554|UniProtKB=A9UJN4 | |||||||
| family | PTHR10257 | ||||||||
| NCBI | gene | 179526 | |||||||
| RefSeq | protein | NM_001129373.4 | |||||||
| NM_001383395.2 | |||||||||
| NM_001383396.2 | |||||||||
| NM_001269354.3 | |||||||||
| TrEMBL | UniProtAcc | A9UJN4 | |||||||
| Q17948 | |||||||||
| Q9U3Q1 | |||||||||
| H9G2X3 | |||||||||
| UniProt_GCRP | UniProtAcc | A9UJN4 | |||||||
| OMIM | gene | 601646 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 15 Dec 2006 15:03:44 | WBPerson1847 | Name_change | CGC_name | pptr-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pptr | ||||||||
| Allele (105) | |||||||||
| Strain | WBStrain00002773 | ||||||||
| WBStrain00002834 | |||||||||
| WBStrain00003064 | |||||||||
| WBStrain00032037 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00012348 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable protein phosphatase activator activity. Involved in P granule assembly. Predicted to be located in cytosol and nucleus. Predicted to be part of protein phosphatase type 2A complex. Expressed in head and tail. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 35. Is an ortholog of human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070065 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9312) | ||||
| Molecular_info | Corresponding_CDS | C13G3.3a | |||||||
| C13G3.3b | |||||||||
| C13G3.3c | |||||||||
| C13G3.3d | |||||||||
| Corresponding_transcript | C13G3.3a.1 | ||||||||
| C13G3.3a.2 | |||||||||
| C13G3.3a.3 | |||||||||
| C13G3.3a.4 | |||||||||
| C13G3.3b.1 | |||||||||
| C13G3.3b.2 | |||||||||
| C13G3.3b.3 | |||||||||
| C13G3.3c.1 | |||||||||
| C13G3.3d.1 | |||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf653058 | ||||||||
| WBsf1001251 | |||||||||
| WBsf1001252 | |||||||||
| WBsf1020389 | |||||||||
| WBsf1020390 | |||||||||
| WBsf234486 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00003300 | ||||||||
| WBCnstr00003356 | |||||||||
| WBCnstr00003557 | |||||||||
| WBCnstr00033650 | |||||||||
| Construct_product | WBCnstr00033650 | ||||||||
| Antibody | WBAntibody00002836 | ||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | V | Position | 2.89875 | Error | 0.004967 | |||
| Positive | Positive_clone | C13G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025329 | ||||||||
| WBPaper00028381 | |||||||||
| WBPaper00032946 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041279 | |||||||||
| WBPaper00046196 | |||||||||
| WBPaper00054793 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060803 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
