WormBase Tree Display for Gene: WBGene00007993
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| WBGene00007993 | SMap | S_parent | Sequence | C37E2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | idhb-1 | Person_evidence | WBPerson1983 | |||||
| WBPerson261 | |||||||||
| Sequence_name | C37E2.1 | ||||||||
| Molecular_name | C37E2.1 | ||||||||
| C37E2.1.1 | |||||||||
| CE08620 | |||||||||
| C37E2.1.2 | |||||||||
| Other_name | CELE_C37E2.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | idhb-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Dec 2011 12:14:43 | WBPerson2970 | Name_change | CGC_name | idhb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | idhb | ||||||||
| Allele (85) | |||||||||
| Strain | WBStrain00001632 | ||||||||
| WBStrain00003080 | |||||||||
| WBStrain00032521 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00009440 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016266 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009664 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | C37E2.1 encodes the C. elegans homolog of the beta subunit of an NAD+-dependent mitochondrial isocitrate dehydrogenase; by homology, the product of C37E2.1 is predicted to catalyze the formation of alpha-ketoglutarate from isocitrate as part of the citric acid cycle. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 26 Oct 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable isocitrate dehydrogenase (NAD+) activity and metal ion binding activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be located in mitochondrion. Expressed in head. Human ortholog(s) of this gene implicated in retinitis pigmentosa 46. Is an ortholog of human IDH3B (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110409 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5385) | ||||
| Molecular_info | Corresponding_CDS | C37E2.1 | |||||||
| Corresponding_transcript | C37E2.1.1 | ||||||||
| C37E2.1.2 | |||||||||
| Other_sequence (88) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00093933 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029640 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070695 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093903 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011720 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093973 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070696 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042113 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1762 | ||||||||
| Chronogram1864 | |||||||||
| Expr5463 | |||||||||
| Expr1011002 | |||||||||
| Expr1033477 | |||||||||
| Expr1146114 | |||||||||
| Expr2012672 | |||||||||
| Expr2030908 | |||||||||
| Drives_construct | WBCnstr00002471 | ||||||||
| WBCnstr00004352 | |||||||||
| WBCnstr00033325 | |||||||||
| Construct_product | WBCnstr00033325 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (71) | |||||||||
| Map_info | Map | X | Position | 16.6584 | |||||
| Positive | Positive_clone | C37E2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027145 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065625 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
