WormBase Tree Display for Gene: WBGene00008047
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WBGene00008047 | SMap | S_parent | Sequence | C40H5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | lact-7 | Person_evidence | WBPerson168 | |||||
Sequence_name | C40H5.4 | ||||||||
Molecular_name | C40H5.4 | ||||||||
C40H5.4.1 | |||||||||
CE43195 | |||||||||
Other_name | CELELAC2 | Paper_evidence | WBPaper00012904 | ||||||
CELE_C40H5.4 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | lact-7 | ||||||||
DB_info | Database | AceView | gene | XM375 | |||||
WormQTL | gene | WBGene00008047 | |||||||
WormFlux | gene | WBGene00008047 | |||||||
NDB | locus_tag | CELE_C40H5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008047|UniProtKB=Q9U3M7 | |||||||
family | PTHR46825 | ||||||||
NCBI | gene | 183371 | |||||||
RefSeq | protein | NM_077568.4 | |||||||
TREEFAM | TREEFAM_ID | TF315050 | |||||||
TrEMBL | UniProtAcc | Q9U3M7 | |||||||
UniProt_GCRP | UniProtAcc | Q9U3M7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 13 Apr 2007 16:02:30 | WBPerson2970 | Name_change | CGC_name | lact-7 | ||||
3 | 10 Oct 2008 13:32:46 | WBPerson1983 | Event | Acquires_merge | WBGene00008046 | ||||
Acquires_merge | WBGene00008046 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lact | ||||||||
Allele (73) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (26) | |||||||||
Paralog | WBGene00012890 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00012777 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | lact-7 encodes a beta-lactamase domain-containing protein. | Paper_evidence | WBPaper00012904 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 18 Dec 2007 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABalpppappp; enteric muscle; interfacial epithelial cell; rectum; and somatic gonad precursor based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and rrf-3 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including D-glucose; stavudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Bacterial tandem repeat domain 1; Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C40H5.4 | |||||||
Corresponding_transcript | C40H5.4.1 | ||||||||
Other_sequence | MCC04395_1 | ||||||||
MC04332 | |||||||||
HBC19269_1 | |||||||||
EX911245.1 | |||||||||
Associated_feature | WBsf648573 | ||||||||
WBsf1007107 | |||||||||
WBsf1023932 | |||||||||
WBsf236420 | |||||||||
Experimental_info | RNAi_result | WBRNAi00042267 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012526 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011823 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00029714 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00029713 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011824 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042266 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066645 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024137 | ||||||||
Expr1033496 | |||||||||
Expr1146259 | |||||||||
Expr2012999 | |||||||||
Expr2031231 | |||||||||
Drives_construct | WBCnstr00033277 | ||||||||
Construct_product | WBCnstr00033277 | ||||||||
Microarray_results (37) | |||||||||
Expression_cluster (159) | |||||||||
Interaction (33) | |||||||||
Map_info | Map | X | Position | 6.69272 | |||||
Positive | Positive_clone | C40H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012904 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |