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WormBase Tree Display for Gene: WBGene00008047

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Name Class

WBGene00008047SMapS_parentSequenceC40H5
IdentityVersion3
NameCGC_namelact-7Person_evidenceWBPerson168
Sequence_nameC40H5.4
Molecular_nameC40H5.4
C40H5.4.1
CE43195
Other_nameCELELAC2Paper_evidenceWBPaper00012904
CELE_C40H5.4Accession_evidenceNDBBX284606
Public_namelact-7
DB_infoDatabaseAceViewgeneXM375
WormQTLgeneWBGene00008047
WormFluxgeneWBGene00008047
NDBlocus_tagCELE_C40H5.4
PanthergeneCAEEL|WormBase=WBGene00008047|UniProtKB=Q9U3M7
familyPTHR46825
NCBIgene183371
RefSeqproteinNM_077568.4
TREEFAMTREEFAM_IDTF315050
TrEMBLUniProtAccQ9U3M7
UniProt_GCRPUniProtAccQ9U3M7
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
213 Apr 2007 16:02:30WBPerson2970Name_changeCGC_namelact-7
310 Oct 2008 13:32:46WBPerson1983EventAcquires_mergeWBGene00008046
Acquires_mergeWBGene00008046
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlact
Allele (73)
RNASeq_FPKM (74)
Ortholog (26)
ParalogWBGene00012890Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00012777Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionConcise_descriptionlact-7 encodes a beta-lactamase domain-containing protein.Paper_evidenceWBPaper00012904
Curator_confirmedWBPerson1843
Date_last_updated18 Dec 2007 00:00:00
Automated_descriptionEnriched in several structures, including ABalpppappp; enteric muscle; interfacial epithelial cell; rectum; and somatic gonad precursor based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and rrf-3 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including D-glucose; stavudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Bacterial tandem repeat domain 1; Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC40H5.4
Corresponding_transcriptC40H5.4.1
Other_sequenceMCC04395_1
MC04332
HBC19269_1
EX911245.1
Associated_featureWBsf648573
WBsf1007107
WBsf1023932
WBsf236420
Experimental_infoRNAi_resultWBRNAi00042267Inferred_automaticallyRNAi_primary
WBRNAi00012526Inferred_automaticallyRNAi_primary
WBRNAi00011823Inferred_automaticallyRNAi_primary
WBRNAi00029714Inferred_automaticallyRNAi_primary
WBRNAi00029713Inferred_automaticallyRNAi_primary
WBRNAi00011824Inferred_automaticallyRNAi_primary
WBRNAi00042266Inferred_automaticallyRNAi_primary
WBRNAi00066645Inferred_automaticallyRNAi_primary
Expr_patternExpr1024137
Expr1033496
Expr1146259
Expr2012999
Expr2031231
Drives_constructWBCnstr00033277
Construct_productWBCnstr00033277
Microarray_results (37)
Expression_cluster (159)
Interaction (33)
Map_infoMapXPosition6.69272
PositivePositive_cloneC40H5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012904
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene