WormBase Tree Display for Gene: WBGene00008280
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| WBGene00008280 | SMap | S_parent | Sequence | C53D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | acc-2 | Paper_evidence | WBPaper00025007 | |||||
| Person_evidence | WBPerson134 | ||||||||
| Sequence_name | C53D6.3 | ||||||||
| Molecular_name | C53D6.3 | ||||||||
| C53D6.3.1 | |||||||||
| CE05488 | |||||||||
| Other_name | CELE_C53D6.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | acc-2 | ||||||||
| DB_info | Database | AceView | gene | 4J783 | |||||
| WormQTL | gene | WBGene00008280 | |||||||
| WormFlux | gene | WBGene00008280 | |||||||
| NDB | locus_tag | CELE_C53D6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008280|UniProtKB=Q18812 | |||||||
| family | PTHR18945 | ||||||||
| NCBI | gene | 183758 | |||||||
| RefSeq | protein | NM_069166.3 | |||||||
| SwissProt | UniProtAcc | Q18812 | |||||||
| TREEFAM | TREEFAM_ID | TF315490 | |||||||
| UniProt_GCRP | UniProtAcc | Q18812 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Feb 2007 12:03:20 | WBPerson2970 | Name_change | CGC_name | acc-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | acc | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00036849 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (27) | |||||||||
| Paralog (100) | |||||||||
| Structured_description | Automated_description | Predicted to enable transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in neuron projection and synapse. Predicted to be part of chloride channel complex. Expressed in neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C53D6.3 | |||||||
| Corresponding_transcript | C53D6.3.1 | ||||||||
| Other_sequence | Tcol_isotig05703 | ||||||||
| Dviv_isotig28764 | |||||||||
| Tcol_isotig05704 | |||||||||
| Tcol_isotig05705 | |||||||||
| Acan_isotig11861 | |||||||||
| Tcol_isotig05702 | |||||||||
| Acan_isotig22685 | |||||||||
| FG351734.1 | |||||||||
| Associated_feature | WBsf997337 | ||||||||
| WBsf1017912 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012365 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043099 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030119 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12720 | ||||||||
| Expr15313 | |||||||||
| Expr1012085 | |||||||||
| Expr1147065 | |||||||||
| Expr2009121 | |||||||||
| Expr2027358 | |||||||||
| Drives_construct | WBCnstr00020962 | ||||||||
| WBCnstr00022684 | |||||||||
| WBCnstr00033088 | |||||||||
| Construct_product | WBCnstr00022529 | ||||||||
| WBCnstr00022684 | |||||||||
| WBCnstr00033088 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction | WBInteraction000381490 | ||||||||
| WBInteraction000385244 | |||||||||
| Map_info | Map | IV | Position | 4.01003 | Error | 0.001743 | |||
| Positive | Positive_clone | C53D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026296 | ||||||||
| WBPaper00039431 | |||||||||
| WBPaper00046043 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058330 | |||||||||
| WBPaper00061589 | |||||||||
| WBPaper00065804 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
