WormBase Tree Display for Gene: WBGene00008301

WBGene00008301 SMap: S_parent: Sequence: C54D10
  Identity: Version: 4
    Name: CGC_name: pals-39 Person_evidence: WBPerson260
      Sequence_name: C54D10.7
      Molecular_name: C54D10.7
        WP:CE43116
        CE43116
        C54D10.7.1
      Other_name: CELE_C54D10.7 Accession_evidence: NDB BX284605
        dct-3 Paper_evidence: WBPaper00031095
          Person_evidence: WBPerson1157
      Public_name: pals-39
    DB_info: Database: AceView gene 5M916
        WormQTL gene WBGene00008301
        WormFlux gene WBGene00008301
        NDB locus_tag CELE_C54D10.7
        NCBI gene 183784
        RefSeq mRNA NM_001269488.1
          protein NP_001256417.1
            NM_001269488.3
        TREEFAM TREEFAM_ID TF322379
        UniProt UniProtAcc B6EU64
        TrEMBL UniProtAcc B6EU64
        UniProt_GCRP UniProtAcc B6EU64
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Nov 2007 16:33:50 WBPerson2970 Name_change: CGC_name: dct-3
        3 25 Sep 2008 13:41:44 WBPerson4025 Event: Split_into: WBGene00138721
        4 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-39
                Other_name: dct-3
      Split_into: WBGene00138721
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (106)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP5557
      CEOP550
    Ortholog (27)
    Paralog: WBGene00012091 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00013294 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00138721 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00044787 Caenorhabditis elegans From_analysis: Inparanoid_8
    Structured_description: Automated_description: Enriched in DA neuron; VA neuron; dopaminergic neurons; and intestine based on tiling array studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Tunicamycin; D-glucose; and stavudine based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C54D10.7
    Corresponding_CDS_history: C54D10.7a:wp195
      C54D10.7b:wp195
    Corresponding_transcript: C54D10.7.1
  Experimental_info: RNAi_result: WBRNAi00070092 Inferred_automatically: RNAi_primary
      WBRNAi00012385 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019237
      Expr1147112
      Expr2014710
      Expr2032945
    Drives_construct: WBCnstr00033071
    Construct_product: WBCnstr00033071
    Microarray_results: SMD_C54D10.7
      GPL14144_C54D10.7_1044-1103_0.956_1_A
      GPL19516_CGZ0010507
      GPL21109_C54D10.7
    Expression_cluster (281)
    Interaction (72)
  Map_info: Map: V Position: 4.23276 Error: 0.008673
    Positive: Positive_clone: C54D10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031095
    WBPaper00061319
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene