WormBase Tree Display for Gene: WBGene00008355
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| WBGene00008355 | SMap | S_parent | Sequence | D1025 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-141 | Person_evidence | WBPerson655 | |||||
| Sequence_name | D1025.3 | ||||||||
| Molecular_name | D1025.3 | ||||||||
| D1025.3.1 | |||||||||
| CE51317 | |||||||||
| Other_name | CELE_D1025.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | fbxa-141 | ||||||||
| DB_info | Database | AceView | gene | XP130 | |||||
| WormQTL | gene | WBGene00008355 | |||||||
| WormFlux | gene | WBGene00008355 | |||||||
| NDB | locus_tag | CELE_D1025.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008355|UniProtKB=O62123 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 183903 | |||||||
| RefSeq | protein | NM_078012.5 | |||||||
| TREEFAM | TREEFAM_ID | TF352371 | |||||||
| TrEMBL | UniProtAcc | O62123 | |||||||
| UniProt_GCRP | UniProtAcc | O62123 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-141 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (41) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00128832 | Caenorhabditis japonica | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00058504 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WBGene00031852 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
| WBGene00153321 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| WBGene00163848 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| chrX_pilon.g20596 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (219) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in head mesodermal cell; interneuron; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; daf-12; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including stavudine; Rifampin; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1025.3 | |||||||
| Corresponding_CDS_history | D1025.3:wp252 | ||||||||
| Corresponding_transcript | D1025.3.1 | ||||||||
| Associated_feature | WBsf654573 | ||||||||
| WBsf654574 | |||||||||
| WBsf671267 | |||||||||
| WBsf671268 | |||||||||
| WBsf979038 | |||||||||
| WBsf1007926 | |||||||||
| WBsf1024412 | |||||||||
| WBsf238237 | |||||||||
| WBsf238238 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030329 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043359 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012512 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026548 | ||||||||
| Expr1033620 | |||||||||
| Expr1147341 | |||||||||
| Expr2011477 | |||||||||
| Expr2029716 | |||||||||
| Drives_construct | WBCnstr00033033 | ||||||||
| Construct_product | WBCnstr00033033 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction | WBInteraction000190234 | ||||||||
| WBInteraction000257376 | |||||||||
| WBInteraction000270227 | |||||||||
| WBInteraction000293804 | |||||||||
| WBInteraction000368986 | |||||||||
| WBInteraction000438349 | |||||||||
| WBInteraction000442523 | |||||||||
| WBInteraction000547432 | |||||||||
| Map_info | Map | X | Position | 16.7273 | |||||
| Positive | Positive_clone | D1025 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
