WormBase Tree Display for Gene: WBGene00008402
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| WBGene00008402 | SMap | S_parent | Sequence | D2013 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | wdfy-2 | Paper_evidence | WBPaper00028279 | |||||
| Person_evidence | WBPerson419 | ||||||||
| Sequence_name | D2013.2 | ||||||||
| Molecular_name | D2013.2 | ||||||||
| D2013.2.1 | |||||||||
| CE00928 | |||||||||
| Other_name | CELE_D2013.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | wdfy-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | wdfy-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | wdfy | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00033255 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062975 | ||||||||
| 00062976 | |||||||||
| 00062977 | |||||||||
| 00062978 | |||||||||
| 00062979 | |||||||||
| 00062980 | |||||||||
| 00062981 | |||||||||
| 00062982 | |||||||||
| 00062983 | |||||||||
| 00116305 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00011550 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| WBGene00000166 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004101 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004109 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015561 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | wdfy-2 encodes a WD40- and FYVE-domain containing protein that is orthologous to mammalian WDFY2; WDFY-2 is one of twelve C. elegans FYVE-domain-containing proteins; wdfy-2 activity is essential for wild-type levels of endocytosis. | Paper_evidence | WBPaper00028279 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphatidylinositol-3-phosphate binding activity. Involved in endocytosis. Predicted to be located in early endosome. Is an ortholog of human WDFY1 (WD repeat and FYVE domain containing 1) and WDFY2 (WD repeat and FYVE domain containing 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D2013.2 | |||||||
| Corresponding_transcript | D2013.2.1 | ||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf654845 | ||||||||
| WBsf658091 | |||||||||
| WBsf221867 | |||||||||
| WBsf221868 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr3597 | ||||||||
| Expr11507 | |||||||||
| Expr14420 | |||||||||
| Expr1026341 | |||||||||
| Expr1033640 | |||||||||
| Expr1147435 | |||||||||
| Expr2018049 | |||||||||
| Expr2036186 | |||||||||
| Drives_construct | WBCnstr00032990 | ||||||||
| Construct_product | WBCnstr00011521 | ||||||||
| WBCnstr00032990 | |||||||||
| WBCnstr00040850 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction (75) | |||||||||
| Map_info | Map | II | Position | 1.13137 | Error | 0.011495 | |||
| Positive | Positive_clone | D2013 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028279 | ||||||||
| WBPaper00031805 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046432 | |||||||||
| WBPaper00053872 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
