WormBase Tree Display for Gene: WBGene00008403
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| WBGene00008403 | SMap | S_parent | Sequence | D2013 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | csa-1 | Paper_evidence | WBPaper00046135 | |||||
| Person_evidence | WBPerson8633 | ||||||||
| Sequence_name | D2013.3 | ||||||||
| Molecular_name | D2013.3 | ||||||||
| D2013.3.1 | |||||||||
| CE17620 | |||||||||
| Other_name | CELE_D2013.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | csa-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Nov 2016 11:06:21 | WBPerson2970 | Name_change | CGC_name | csa-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | csa | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00062969 | ||||||||
| 00062970 | |||||||||
| 00062971 | |||||||||
| 00062972 | |||||||||
| 00062973 | |||||||||
| 00062974 | |||||||||
| 00116306 | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00003036 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00004312 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021899 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; protein polyubiquitination; and transcription-coupled nucleotide-excision repair. Predicted to be part of Cul4A-RING E3 ubiquitin ligase complex and nucleotide-excision repair complex. Used to study Cockayne syndrome. Human ortholog(s) of this gene implicated in Cockayne syndrome A and UV-sensitive syndrome. Is an ortholog of human ERCC8 (ERCC excision repair 8, CSA ubiquitin ligase complex subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:2962 | Homo sapiens | Paper_evidence | WBPaper00046135 | ||||
| Accession_evidence | OMIM | 216400 | |||||||
| 614621 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jul 2015 00:00:00 | ||||||||
| Potential_model | DOID:2962 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3439) | |||||
| DOID:0060240 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3439) | ||||||
| DOID:0080907 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3439) | ||||||
| Models_disease_in_annotation | WBDOannot00000358 | ||||||||
| Molecular_info | Corresponding_CDS | D2013.3 | |||||||
| Corresponding_transcript | D2013.3.1 | ||||||||
| Associated_feature | WBsf650419 | ||||||||
| WBsf989025 | |||||||||
| WBsf1012841 | |||||||||
| WBsf223634 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012563 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000789 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043439 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043440 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010291 | ||||||||
| Expr1033641 | |||||||||
| Expr1147436 | |||||||||
| Expr2010546 | |||||||||
| Expr2028786 | |||||||||
| Drives_construct | WBCnstr00032989 | ||||||||
| Construct_product | WBCnstr00032989 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction | WBInteraction000153156 | ||||||||
| WBInteraction000200409 | |||||||||
| WBInteraction000287513 | |||||||||
| WBInteraction000335464 | |||||||||
| WBInteraction000395045 | |||||||||
| WBInteraction000451549 | |||||||||
| Map_info | Map | II | Position | 1.12779 | |||||
| Positive | Positive_clone | D2013 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00046135 | ||||||||
| WBPaper00053104 | |||||||||
| WBPaper00054563 | |||||||||
| WBPaper00060426 | |||||||||
| WBPaper00065149 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
