WormBase Tree Display for Gene: WBGene00008477
expand all nodes | collapse all nodes | view schema
WBGene00008477 | SMap | S_parent | Sequence | E03H4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name (5) | |||||||
DB_info | Database | AceView | gene | 1N22 | |||
WormQTL | gene | WBGene00008477 | |||||
WormFlux | gene | WBGene00008477 | |||||
NDB | locus_tag | CELE_E03H4.10 | |||||
Panther | gene | CAEEL|WormBase=WBGene00008477|UniProtKB=O17741 | |||||
family | PTHR22991 | ||||||
NCBI | gene | 173111 | |||||
RefSeq | protein | NM_060751.6 | |||||
TREEFAM | TREEFAM_ID | TF351663 | |||||
TrEMBL | UniProtAcc | O17741 | |||||
UniProt_GCRP | UniProtAcc | O17741 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (30) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (50) | |||||||
Paralog (52) | |||||||
Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; male-specific anatomical entity; mechanosensory neurons; and pharyngeal muscle cell based on microarray; tiling array; and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by thirty-six chemicals including Heme; hydrogen sulfide; and methylmercury hydroxide based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | E03H4.10 | |||||
Corresponding_transcript | E03H4.10.1 | ||||||
Associated_feature | WBsf649663 | ||||||
WBsf665023 | |||||||
WBsf985560 | |||||||
WBsf220429 | |||||||
Experimental_info | RNAi_result | WBRNAi00043649 | Inferred_automatically | RNAi_primary | |||
WBRNAi00078251 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00003312 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030489 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1016074 | ||||||
Expr1033688 | |||||||
Expr1147634 | |||||||
Expr2010098 | |||||||
Expr2028341 | |||||||
Drives_construct | WBCnstr00032940 | ||||||
Construct_product | WBCnstr00032940 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (311) | |||||||
Interaction (13) | |||||||
Map_info | Map | I | Position | 13.1994 | Error | 0.001498 | |
Positive | Positive_clone | E03H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00027722 | ||||||
WBPaper00031686 | |||||||
WBPaper00033987 | |||||||
WBPaper00037524 | |||||||
WBPaper00038491 | |||||||
WBPaper00039120 | |||||||
WBPaper00055090 | |||||||
WBPaper00059843 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |