WormBase Tree Display for Gene: WBGene00009320
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| WBGene00009320 | SMap | S_parent | Sequence | F32B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | prp-18 | |||||||
| Sequence_name | F32B6.3 | ||||||||
| Molecular_name | F32B6.3 | ||||||||
| F32B6.3.1 | |||||||||
| CE35518 | |||||||||
| F32B6.3.2 | |||||||||
| Other_name | CELE_F32B6.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | prp-18 | ||||||||
| DB_info | Database | AceView | gene | 4K646 | |||||
| WormQTL | gene | WBGene00009320 | |||||||
| WormFlux | gene | WBGene00009320 | |||||||
| NDB | locus_tag | CELE_F32B6.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009320|UniProtKB=O45431 | |||||||
| family | PTHR13007 | ||||||||
| NCBI | gene | 177840 | |||||||
| RefSeq | protein | NM_069375.7 | |||||||
| TREEFAM | TREEFAM_ID | TF315049 | |||||||
| TrEMBL | UniProtAcc | O45431 | |||||||
| UniProt_GCRP | UniProtAcc | O45431 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Mar 2020 15:12:37 | WBPerson1983 | Name_change | CGC_name | prp-18 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00034495 | ||||||||
| 00034496 | |||||||||
| 00034497 | |||||||||
| 00034498 | |||||||||
| 00034499 | |||||||||
| 00034500 | |||||||||
| 00034501 | |||||||||
| 00034502 | |||||||||
| 00117041 | |||||||||
| 00117042 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in generation of catalytic spliceosome for second transesterification step. Predicted to be located in nuclear speck. Predicted to be part of U2-type post-spliceosomal complex; U4/U6 x U5 tri-snRNP complex; and U5 snRNP. Is an ortholog of human PRPF18 (pre-mRNA processing factor 18). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32B6.3 | |||||||
| Corresponding_CDS_history | F32B6.3:wp109 | ||||||||
| Corresponding_transcript | F32B6.3.1 | ||||||||
| F32B6.3.2 | |||||||||
| Other_sequence (45) | |||||||||
| Associated_feature | WBsf652089 | ||||||||
| WBsf997494 | |||||||||
| WBsf230628 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr1026522 | ||||||||
| Expr1034074 | |||||||||
| Expr1149997 | |||||||||
| Expr2003213 | |||||||||
| Expr2021425 | |||||||||
| Drives_construct | WBCnstr00032289 | ||||||||
| Construct_product | WBCnstr00032289 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (83) | |||||||||
| Map_info | Map | IV | Position | 4.43673 | |||||
| Positive | Positive_clone | F32B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031224 | ||||||||
| WBPaper00033469 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
