WormBase Tree Display for Gene: WBGene00009477
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| WBGene00009477 | SMap | S_parent | Sequence | F36F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rbpl-1 | Paper_evidence | WBPaper00042183 | |||||
| Person_evidence | WBPerson3012 | ||||||||
| Sequence_name | F36F2.3 | ||||||||
| Molecular_name | F36F2.3a | ||||||||
| F36F2.3a.1 | |||||||||
| CE34550 | |||||||||
| F36F2.3b | |||||||||
| CE39152 | |||||||||
| F36F2.3b.1 | |||||||||
| Other_name | tag-214 | Person_evidence | WBPerson201 | ||||||
| CELE_F36F2.3 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rbpl-1 | ||||||||
| DB_info | Database | AceView | gene | 1J586 | |||||
| WormQTL | gene | WBGene00009477 | |||||||
| WormFlux | gene | WBGene00009477 | |||||||
| NDB | locus_tag | CELE_F36F2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009477|UniProtKB=O62235 | |||||||
| family | PTHR15439 | ||||||||
| NCBI | gene | 172720 | |||||||
| RefSeq | protein | NM_001037887.4 | |||||||
| NM_001383544.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF350543 | |||||||
| TrEMBL | UniProtAcc | O62235 | |||||||
| Q38G51 | |||||||||
| UniProt_GCRP | UniProtAcc | O62235 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Dec 2004 16:59:41 | WBPerson2970 | Name_change | CGC_name | tag-214 | ||||
| 3 | 05 Apr 2013 16:32:13 | WBPerson2970 | Name_change | CGC_name | rbpl-1 | ||||
| Other_name | tag-214 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rbpl | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00035976 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00037401 | ||||||||
| 00037402 | |||||||||
| 00037403 | |||||||||
| 00037404 | |||||||||
| 00037405 | |||||||||
| 00037406 | |||||||||
| 00037407 | |||||||||
| 00117132 | |||||||||
| 00117133 | |||||||||
| Contained_in_operon | CEOP1516 | ||||||||
| Ortholog (57) | |||||||||
| Paralog | WBGene00012794 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rbpl-1 encodes a protein containing a DWNN domain that has similarity to the E3 ubiquitin-protein ligase RBBP6 (Retinoblastoma binding protein 6); loss of rbpl-1 activity via RNAi results in embryonic lethality and sick, slow growing animals with disorganized germlines. | Paper_evidence | WBPaper00029085 | |||||
| WBPaper00004402 | |||||||||
| WBPaper00004651 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Feb 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in nucleus. Expressed in intestine; neurons; spermatheca; and vulva. Is an ortholog of human RBBP6 (RB binding protein 6, ubiquitin ligase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F36F2.3a | |||||||
| F36F2.3b | |||||||||
| Corresponding_CDS_history | F36F2.3:wp60 | ||||||||
| F36F2.3:wp104 | |||||||||
| Corresponding_transcript | F36F2.3a.1 | ||||||||
| F36F2.3b.1 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf649436 | ||||||||
| WBsf664654 | |||||||||
| WBsf984554 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr10818 | ||||||||
| Expr1019655 | |||||||||
| Expr1034148 | |||||||||
| Expr1150373 | |||||||||
| Expr2015274 | |||||||||
| Expr2033508 | |||||||||
| Drives_construct | WBCnstr00037857 | ||||||||
| Construct_product | WBCnstr00017745 | ||||||||
| WBCnstr00037857 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (83) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | I | Position | 3.37099 | Error | 0.00815 | |||
| Positive | Positive_clone | F36F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4988 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005458 | ||||||||
| WBPaper00027315 | |||||||||
| WBPaper00029085 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040316 | |||||||||
| WBPaper00043670 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00049531 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
