WormBase Tree Display for Gene: WBGene00009515
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| WBGene00009515 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | clec-170 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | F38A1.1 | ||||||||
| Molecular_name | F38A1.1 | ||||||||
| F38A1.1.1 | |||||||||
| CE41536 | |||||||||
| Other_name | CELE_F38A1.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clec-170 | ||||||||
| DB_info | Database | AceView | gene | 4C25 | |||||
| WormQTL | gene | WBGene00009515 | |||||||
| WormFlux | gene | WBGene00009515 | |||||||
| NDB | locus_tag | CELE_F38A1.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009515|UniProtKB=A4F318 | |||||||
| family | PTHR23062 | ||||||||
| NCBI | gene | 3565354 | |||||||
| RefSeq | protein | NM_171263.7 | |||||||
| TREEFAM | TREEFAM_ID | TF317818 | |||||||
| TrEMBL | UniProtAcc | A4F318 | |||||||
| UniProt_GCRP | UniProtAcc | A4F318 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 06 Sep 2007 16:47:02 | WBPerson1849 | Event | Acquires_merge | WBGene00007477 | ||||
| 3 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-170 | ||||
| Acquires_merge | WBGene00007477 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (316) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (56) | |||||||||
| Paralog (45) | |||||||||
| Structured_description | Automated_description | Enriched in AIZL; AIZR; and intestine based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including D-glucose; Psoralens; and allantoin based on RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38A1.1 | |||||||
| Corresponding_CDS_history | F38A1.1:wp150 | ||||||||
| F38A1.1:wp181 | |||||||||
| Corresponding_transcript | F38A1.1.1 | ||||||||
| Other_sequence | GO249402.1 | ||||||||
| Associated_feature | WBsf995390 | ||||||||
| WBsf995391 | |||||||||
| WBsf1016688 | |||||||||
| WBsf1016689 | |||||||||
| WBsf227927 | |||||||||
| WBsf227928 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046655 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014511 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040203 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028725 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019907 | ||||||||
| Expr1150527 | |||||||||
| Expr2010093 | |||||||||
| Expr2028335 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (161) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | IV | Position | -20.4965 | Error | 0.039009 | |||
| Positive | Positive_clone | F38A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
