WormBase Tree Display for Gene: WBGene00009599
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WBGene00009599 | SMap | S_parent | Sequence | F40G12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F40G12.4 | |||||||
Molecular_name | F40G12.4 | ||||||||
F40G12.4.1 | |||||||||
CE30075 | |||||||||
Other_name | CELE_F40G12.4 | Accession_evidence | NDB | BX284605 | |||||
Public_name | F40G12.4 | ||||||||
DB_info | Database | AceView | gene | 5O748 | |||||
WormQTL | gene | WBGene00009599 | |||||||
WormFlux | gene | WBGene00009599 | |||||||
NDB | locus_tag | CELE_F40G12.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009599|UniProtKB=Q20250 | |||||||
family | PTHR31897 | ||||||||
NCBI | gene | 185564 | |||||||
RefSeq | protein | NM_074130.3 | |||||||
TREEFAM | TREEFAM_ID | TF315866 | |||||||
TrEMBL | UniProtAcc | Q20250 | |||||||
UniProt_GCRP | UniProtAcc | Q20250 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (19) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00127818 | Caenorhabditis japonica | From_analysis | TreeFam | |||||
WBGene00027332 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00152520 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00080962 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CSP26.g19715 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_02138.g25051 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_11311 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_020302 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g16469 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (27) | |||||||||
Structured_description | Automated_description | Enriched in amphid sheath cell and germ line based on RNA-seq studies. Is affected by several genes including rrf-3; pgl-1; and eri-1 based on tiling array; microarray; and RNA-seq studies. Is affected by seven chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF19 and Domain of unknown function (DUF19). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F40G12.4 | |||||||
Corresponding_CDS_history | F40G12.4:wp70 | ||||||||
Corresponding_transcript | F40G12.4.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00046897 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00014680 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032048 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1028078 | ||||||||
Expr1034201 | |||||||||
Expr1150764 | |||||||||
Drives_construct | WBCnstr00032070 | ||||||||
Construct_product | WBCnstr00032070 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (35) | |||||||||
Interaction | WBInteraction000370224 | ||||||||
Map_info | Positive | Positive_clone | F40G12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | 6.21682 | |||||||
Method | Gene |