WormBase Tree Display for Gene: WBGene00009643
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WBGene00009643 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F42G4.6 | |||||||
Molecular_name | F42G4.6 | ||||||||
F42G4.6.1 | |||||||||
CE20776 | |||||||||
Other_name | CELE_F42G4.6 | Accession_evidence | NDB | BX284602 | |||||
Public_name | F42G4.6 | ||||||||
DB_info | Database | AceView | gene | 2N371 | |||||
WormQTL | gene | WBGene00009643 | |||||||
WormFlux | gene | WBGene00009643 | |||||||
NDB | locus_tag | CELE_F42G4.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009643|UniProtKB=G5EFT3 | |||||||
family | PTHR31128 | ||||||||
NCBI | gene | 174952 | |||||||
RefSeq | protein | NM_001383977.2 | |||||||
TREEFAM | TREEFAM_ID | TF315835 | |||||||
TrEMBL | UniProtAcc | G5EFT3 | |||||||
UniProt_GCRP | UniProtAcc | G5EFT3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (13) | |||||||||
Strain | WBStrain00032416 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (31) | |||||||||
Paralog | WBGene00009321 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00044684 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00009705 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015034 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00013590 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00020377 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00015820 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | F42G4.6 encodes a nematode-specific sperm protein; F42G4.6 has no obvious non-nematode homologs, but does have a putative central coiled-coil domain, and is is paralogous to four other C. elegans proteins (B0207.11, F42G4.6, F44F4.10, T08G11.2, and Y81G3A.1); F42G4.6(RNAi) animals exhibit aldicarb resistance; F42G4.6 expression is enriched in spermatogenesis. | Paper_evidence | WBPaper00006390 | |||||
WBPaper00026667 | |||||||||
WBPaper00029335 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 23 Jul 2007 00:00:00 | ||||||||
Automated_description | Enriched in germ line; intestine; and in male based on proteomic and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including mianserin; D-glucose; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F42G4.6 | |||||||
Corresponding_transcript | F42G4.6.1 | ||||||||
Associated_feature | WBsf990320 | ||||||||
WBsf990321 | |||||||||
WBsf1013561 | |||||||||
WBsf222323 | |||||||||
WBsf222324 | |||||||||
Experimental_info | RNAi_result | WBRNAi00021522 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060944 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000691 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047120 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00060942 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00060941 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014840 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00060943 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1023193 | ||||||||
Expr1150988 | |||||||||
Expr2003649 | |||||||||
Expr2021867 | |||||||||
Drives_construct | WBCnstr00032029 | ||||||||
Construct_product | WBCnstr00032029 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (125) | |||||||||
Map_info | Positive | Positive_clone | F42G4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | II | 14.061 | |||||||
Method | Gene |