WormBase Tree Display for Gene: WBGene00009810
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| WBGene00009810 | SMap | S_parent | Sequence | F47B8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srm-6 | Person_evidence | WBPerson522 | |||||
| Sequence_name | F47B8.9 | ||||||||
| Molecular_name | F47B8.9a | ||||||||
| F47B8.9a.1 | |||||||||
| CE38190 | |||||||||
| F47B8.9b | |||||||||
| CE38191 | |||||||||
| F47B8.9b.1 | |||||||||
| Other_name | CELE_F47B8.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srm-6 | ||||||||
| DB_info | Database | AceView | gene | 5O817 | |||||
| WormQTL | gene | WBGene00009810 | |||||||
| WormFlux | gene | WBGene00009810 | |||||||
| NDB | locus_tag | CELE_F47B8.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009810|UniProtKB=Q20527 | |||||||
| family | PTHR47758 | ||||||||
| NCBI | gene | 179931 | |||||||
| RefSeq | protein | NM_074154.5 | |||||||
| NM_182385.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF318966 | |||||||
| TrEMBL | UniProtAcc | Q8I4I5 | |||||||
| Q20527 | |||||||||
| UniProt_GCRP | UniProtAcc | Q20527 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Feb 2005 14:09:59 | WBPerson2970 | Name_change | CGC_name | srm-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srm | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068358 | ||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00005638 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00005639 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00009808 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00010273 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044112 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Predicted to be located in membrane. Expressed in amphid neurons; intestine; and retrovesicular ganglion. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47B8.9a | |||||||
| F47B8.9b | |||||||||
| Corresponding_CDS_history | F47B8.9:wp87 | ||||||||
| F47B8.9a:wp140 | |||||||||
| F47B8.9b:wp140 | |||||||||
| Corresponding_transcript | F47B8.9a.1 | ||||||||
| F47B8.9b.1 | |||||||||
| Associated_feature | WBsf028074 | ||||||||
| WBsf232904 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015167 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr14122 | ||||||||
| Expr1011142 | |||||||||
| Expr1151467 | |||||||||
| Expr2016599 | |||||||||
| Expr2034791 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (47) | |||||||||
| SAGE_tag | SAGE:agtgaaaatt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tccgatattc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:agtgaaaatttgaagaa | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (12) | |||||||||
| Map_info | Map | V | Position | 6.2367 | Error | 0.000892 | |||
| Positive | Positive_clone | F47B8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031972 | ||||||||
| WBPaper00053705 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
