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WormBase Tree Display for Gene: WBGene00009839

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Name Class

WBGene00009839SMapS_parentSequenceF47H4
IdentityVersion2
NameCGC_namefbxa-188Person_evidenceWBPerson655
Sequence_nameF47H4.8
Molecular_nameF47H4.8
F47H4.8.1
CE47247
Other_nameCELE_F47H4.8Accession_evidenceNDBBX284605
Public_namefbxa-188
DB_infoDatabaseAceViewgene5R824
WormQTLgeneWBGene00009839
WormFluxgeneWBGene00009839
NDBlocus_tagCELE_F47H4.8
PanthergeneCAEEL|WormBase=WBGene00009839|UniProtKB=Q9XU29
familyPTHR23015
NCBIgene185954
RefSeqproteinNM_074990.4
TrEMBLUniProtAccQ9XU29
UniProt_GCRPUniProtAccQ9XU29
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Mar 2007 11:55:19WBPerson2970Name_changeCGC_namefbxa-188
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (52)
RNASeq_FPKM (74)
OrthologWBGene00158951Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00156997Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00160702Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00157031Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00155291Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00147399Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00154658Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00151614Caenorhabditis brenneriFrom_analysisInparanoid_8
chrV_pilon.g17430Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (219)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in PLM; Z1; Z4; and body wall muscle cell based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and let-60 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including Rifampin; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF47H4.8
Corresponding_CDS_historyF47H4.8:wp230
Corresponding_transcriptF47H4.8.1
Associated_featureWBsf1002643
WBsf1021263
Experimental_infoRNAi_resultWBRNAi00047706Inferred_automaticallyRNAi_primary
WBRNAi00015223Inferred_automaticallyRNAi_primary
WBRNAi00032465Inferred_automaticallyRNAi_primary
Expr_patternExpr1024380
Expr1151541
Expr2029742
Microarray_results (16)
Expression_cluster (151)
InteractionWBInteraction000524313
Map_infoMapVPosition12.8764Error0.001405
PositivePositive_cloneF47H4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene