WormBase Tree Display for Gene: WBGene00009861
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| WBGene00009861 | SMap | S_parent | Sequence | F49B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | fbxb-8 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F49B2.1 | ||||||||
| Molecular_name | F49B2.1 | ||||||||
| F49B2.1.1 | |||||||||
| CE42945 | |||||||||
| Other_name | CELE_F49B2.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | fbxb-8 | ||||||||
| DB_info | Database | AceView | gene | 1O891 | |||||
| WormQTL | gene | WBGene00009861 | |||||||
| WormFlux | gene | WBGene00009861 | |||||||
| NDB | locus_tag | CELE_F49B2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009861|UniProtKB=O45535 | |||||||
| family | PTHR22899 | ||||||||
| NCBI | gene | 173295 | |||||||
| RefSeq | protein | NM_061098.3 | |||||||
| TrEMBL | UniProtAcc | O45535 | |||||||
| UniProt_GCRP | UniProtAcc | O45535 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-8 | ||||
| 3 | 18 Jul 2008 16:29:38 | WBPerson1983 | Event | Split_into | WBGene00086555 | ||||
| Split_into | WBGene00086555 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxb | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00032497 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (13) | |||||||||
| Paralog (142) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalppappa; ABalpppapa; ABalpppappp; ABalppppaa; and ciliated neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and tph-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including multi-walled carbon nanotube; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; F-box associated; and F-box associated domain, type 2. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49B2.1 | |||||||
| Corresponding_CDS_history | F49B2.1:wp56 | ||||||||
| Corresponding_transcript | F49B2.1.1 | ||||||||
| Associated_feature | WBsf643837 | ||||||||
| WBsf986127 | |||||||||
| WBsf986128 | |||||||||
| WBsf986129 | |||||||||
| WBsf1011225 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047789 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003719 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000733 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028470 | ||||||||
| Expr1034303 | |||||||||
| Expr1151624 | |||||||||
| Expr2011689 | |||||||||
| Expr2029928 | |||||||||
| Drives_construct | WBCnstr00031864 | ||||||||
| Construct_product | WBCnstr00031864 | ||||||||
| Microarray_results | SMD_F49B2.1 | ||||||||
| 174528_s_at | |||||||||
| GPL14144_F49B2.1_563-622_0.908_24_A | |||||||||
| GPL19516_CGZ0022645 | |||||||||
| GPL21109_F49B2.1 | |||||||||
| GPL3518_CE28559 | |||||||||
| GPL8673_F49B2_1P00606 | |||||||||
| GPL8673_F49B2_1P00747 | |||||||||
| GPL9450_F49B2.1 | |||||||||
| cea2.3.15246 | |||||||||
| Expression_cluster (97) | |||||||||
| SAGE_tag | SAGE:aggttttgccgaaggat | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaatttatcg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aggttttgcc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:actgatccct | Strand | Antisense | |||||||
| SAGE:actgatcccttggaaca | Strand | Antisense | |||||||
| Interaction (231) | |||||||||
| Map_info | Map | I | Position | 24.359 | Error | 0.017596 | |||
| Positive | Positive_clone | F49B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
