WormBase Tree Display for Gene: WBGene00009995
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| WBGene00009995 | SMap | S_parent | Sequence | F53F4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spig-9 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F53F4.13 | ||||||||
| Molecular_name | F53F4.13 | ||||||||
| F53F4.13.1 | |||||||||
| CE10978 | |||||||||
| Other_name | CELE_F53F4.13 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | spig-9 | ||||||||
| DB_info | Database | AceView | gene | 5O92 | |||||
| WormQTL | gene | WBGene00009995 | |||||||
| WormFlux | gene | WBGene00009995 | |||||||
| NDB | locus_tag | CELE_F53F4.13 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009995|UniProtKB=Q20724 | |||||||
| family | PTHR33272 | ||||||||
| NCBI | gene | 179846 | |||||||
| RefSeq | protein | NM_073970.7 | |||||||
| TREEFAM | TREEFAM_ID | TF318907 | |||||||
| TrEMBL | UniProtAcc | Q20724 | |||||||
| UniProt_GCRP | UniProtAcc | Q20724 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | spig-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spig | ||||||||
| Allele | WBVar01499886 | ||||||||
| WBVar00475248 | |||||||||
| WBVar00475249 | |||||||||
| WBVar02152444 | |||||||||
| WBVar01499621 | |||||||||
| WBVar01062374 | |||||||||
| WBVar01500212 | |||||||||
| WBVar01500213 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01499316 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Expressed in amphid sheath cell and phasmid sheath cell. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF4473); Protein of unknown function DUF4473; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53F4.13 | |||||||
| Corresponding_transcript | F53F4.13.1 | ||||||||
| Other_sequence | Tcir_isotig21441 | ||||||||
| CBC02780_1 | |||||||||
| CJC03521_1 | |||||||||
| Tcir_isotig20980 | |||||||||
| Associated_feature | WBsf653328 | ||||||||
| WBsf1001854 | |||||||||
| WBsf1020744 | |||||||||
| WBsf234831 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048150 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032705 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015523 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048149 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12752 | ||||||||
| Expr1022221 | |||||||||
| Expr1151959 | |||||||||
| Expr2004074 | |||||||||
| Expr2022298 | |||||||||
| Drives_construct | WBCnstr00007442 | ||||||||
| WBCnstr00031755 | |||||||||
| Construct_product | WBCnstr00031755 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (177) | |||||||||
| Interaction (74) | |||||||||
| Map_info | Map | V | Position | 5.52274 | |||||
| Positive | Positive_clone | F53F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00062002 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
