WormBase Tree Display for Gene: WBGene00010053
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| WBGene00010053 | SMap | S_parent | Sequence | F54D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F54D5.9 | |||||||
| Molecular_name | F54D5.9 | ||||||||
| F54D5.9.1 | |||||||||
| CE03413 | |||||||||
| Other_name | CELE_F54D5.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F54D5.9 | ||||||||
| DB_info | Database | AceView | gene | 2L834 | |||||
| WormQTL | gene | WBGene00010053 | |||||||
| WormFlux | gene | WBGene00010053 | |||||||
| NDB | locus_tag | CELE_F54D5.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010053|UniProtKB=Q20775 | |||||||
| family | PTHR34098 | ||||||||
| NCBI | gene | 174766 | |||||||
| RefSeq | protein | NM_064066.6 | |||||||
| TREEFAM | TREEFAM_ID | TF343134 | |||||||
| TrEMBL | UniProtAcc | Q20775 | |||||||
| UniProt_GCRP | UniProtAcc | Q20775 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069101 | ||||||||
| 00069102 | |||||||||
| Contained_in_operon | CEOP2556 | ||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00009173 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | F54D5.9 encodes an F-box protein orthologous to to human FBXO47 (OMIM:609498, deleted in renal cell carcinoma) and paralogous to PROM-1, that suppresses excess embryonic cell division; F54D5.9(RNAi) animals show hyperproliferating embryonic tissues, while having no obvious meiotic defects. | Paper_evidence | WBPaper00005599 | |||||
| WBPaper00012854 | |||||||||
| WBPaper00031056 | |||||||||
| WBPaper00031235 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 26 Nov 2007 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalppppaa; ABaraapapp; AVK; amphid neurons; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: F-box only protein 47. Is an ortholog of human FBXO47 (F-box protein 47). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D5.9 | |||||||
| Corresponding_transcript | F54D5.9.1 | ||||||||
| Other_sequence | CRC00900_1 | ||||||||
| FD514864.1 | |||||||||
| CRC07977_1 | |||||||||
| CBC06875_1 | |||||||||
| CR02567 | |||||||||
| CSC00963_1 | |||||||||
| Associated_feature | WBsf650590 | ||||||||
| WBsf989798 | |||||||||
| WBsf223958 | |||||||||
| WBsf223959 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022372 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00103817 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007720 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048318 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077845 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032796 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001973 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111794 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103818 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015210 | ||||||||
| Expr1034384 | |||||||||
| Expr1152120 | |||||||||
| Expr2004157 | |||||||||
| Expr2022381 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (130) | |||||||||
| Interaction (210) | |||||||||
| Map_info | Positive | Positive_clone | F54D5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 3.74724 | |||||||
| Reference | WBPaper00012854 | ||||||||
| WBPaper00031056 | |||||||||
| Method | Gene |
