WormBase Tree Display for Gene: WBGene00010079
expand all nodes | collapse all nodes | view schema
| WBGene00010079 | SMap | S_parent | Sequence | F55A11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F55A11.6 | |||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_F55A11.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | F55A11.6 | ||||||||
| DB_info | Database | AceView | gene | 5M265Co | |||||
| WormQTL | gene | WBGene00010079 | |||||||
| WormFlux | gene | WBGene00010079 | |||||||
| NDB | locus_tag | CELE_F55A11.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010079|UniProtKB=G3MU11 | |||||||
| family | PTHR11571 | ||||||||
| NCBI | gene | 179613 | |||||||
| RefSeq | protein | NM_001269437.4 | |||||||
| NM_001047658.3 | |||||||||
| NM_001047659.4 | |||||||||
| NM_001269438.2 | |||||||||
| NM_001269439.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF319225 | |||||||
| TrEMBL | UniProtAcc | I2HAA1 | |||||||
| H9G2W4 | |||||||||
| Q2L6U7 | |||||||||
| P90887 | |||||||||
| G3MU11 | |||||||||
| UniProt_GCRP | UniProtAcc | G3MU11 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (80) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009022 | ||||||||
| Ortholog (24) | |||||||||
| Paralog (46) | |||||||||
| Structured_description | Concise_description | F55A11.6 encodes a protein most similar to glutathione S-transferases; as loss of F55A11.6 activity via large-scale RNAi results in no obvious defects, the precise role of F55A11.6 in C. elegans development and/or behavior is not yet known. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including coelomocyte; germ line; head mesodermal cell; sensory neurons; and tail precursor cell based on proteomic; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on tiling array; microarray; proteomic; and RNA-seq studies. Is affected by seven chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Glutathione S-transferase, C-terminal domain superfamily; Glutathione S-transferase, C-terminal; and Glutathione S-transferase, C-terminal domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55A11.6a | |||||||
| F55A11.6b | |||||||||
| F55A11.6c | |||||||||
| F55A11.6d | |||||||||
| F55A11.6e | |||||||||
| Corresponding_CDS_history | F55A11.6:wp99 | ||||||||
| F55A11.6a:wp175 | |||||||||
| F55A11.6b:wp175 | |||||||||
| Corresponding_transcript | F55A11.6a.1 | ||||||||
| F55A11.6b.1 | |||||||||
| F55A11.6c.1 | |||||||||
| F55A11.6d.1 | |||||||||
| F55A11.6e.1 | |||||||||
| Other_sequence | Hbac_isotig04052 | ||||||||
| EX914000.1 | |||||||||
| CBC04388_1 | |||||||||
| HBC07941_1 | |||||||||
| OOC02907_1 | |||||||||
| EX014594.1 | |||||||||
| EX916542.1 | |||||||||
| Associated_feature | WBsf716832 | ||||||||
| WBsf718411 | |||||||||
| WBsf718412 | |||||||||
| WBsf1001441 | |||||||||
| WBsf1001442 | |||||||||
| WBsf1020500 | |||||||||
| WBsf232547 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048407 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1027546 | ||||||||
| Expr1034398 | |||||||||
| Expr1152201 | |||||||||
| Expr2004194 | |||||||||
| Expr2022414 | |||||||||
| Drives_construct | WBCnstr00031685 | ||||||||
| Construct_product | WBCnstr00031685 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction | WBInteraction000172558 | ||||||||
| WBInteraction000181368 | |||||||||
| WBInteraction000202633 | |||||||||
| WBInteraction000350075 | |||||||||
| WBInteraction000360511 | |||||||||
| WBInteraction000375586 | |||||||||
| WBInteraction000444043 | |||||||||
| Map_info | Positive | Positive_clone | F55A11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 3.38049 | |||||||
| Method | Gene |
