WormBase Tree Display for Gene: WBGene00010260
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| WBGene00010260 | SMap | S_parent | Sequence | F58E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ddx-17 | Person_evidence | WBPerson242 | |||||
| Sequence_name | F58E10.3 | ||||||||
| Molecular_name | F58E10.3a | ||||||||
| F58E10.3a.1 | |||||||||
| CE18785 | |||||||||
| F58E10.3a.2 | |||||||||
| F58E10.3a.3 | |||||||||
| F58E10.3a.4 | |||||||||
| F58E10.3b | |||||||||
| Other_name | CELE_F58E10.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ddx-17 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 25 Sep 2013 10:30:56 | WBPerson2970 | Name_change | CGC_name | ddx-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ddx | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00036456 | ||||||||
| WBStrain00002982 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP5583 | ||||||||
| Ortholog (47) | |||||||||
| Paralog (37) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity and RNA helicase activity. Involved in pre-miRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Expressed in PVDL; PVDR; and neurons. Human ortholog(s) of this gene implicated in skin squamous cell carcinoma. Is an ortholog of human DDX17 (DEAD-box helicase 17). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3151 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2746) | ||||
| Molecular_info | Corresponding_CDS | F58E10.3a | |||||||
| Corresponding_CDS_history | F58E10.3:wp131 | ||||||||
| Corresponding_transcript | F58E10.3b | ||||||||
| F58E10.3a.1 | |||||||||
| F58E10.3a.2 | |||||||||
| F58E10.3a.3 | |||||||||
| F58E10.3a.4 | |||||||||
| Other_sequence (233) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048996 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00075489 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102172 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093563 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093564 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093565 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram774 | ||||||||
| Expr6252 | |||||||||
| Expr12221 | |||||||||
| Expr12225 | |||||||||
| Expr1020727 | |||||||||
| Expr1034473 | |||||||||
| Expr1152735 | |||||||||
| Expr2010834 | |||||||||
| Expr2029072 | |||||||||
| Drives_construct | WBCnstr00003484 | ||||||||
| WBCnstr00017934 | |||||||||
| WBCnstr00020419 | |||||||||
| WBCnstr00031548 | |||||||||
| Construct_product | WBCnstr00020468 | ||||||||
| WBCnstr00031548 | |||||||||
| Antibody | WBAntibody00002678 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction (165) | |||||||||
| Map_info | Map | V | Position | 5.9152 | |||||
| Positive | Positive_clone | F58E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00042023 | |||||||||
| WBPaper00048898 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
