WormBase Tree Display for Gene: WBGene00011116
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WBGene00011116 | SMap | S_parent | Sequence | R07E5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pdcd | ||||||
Allele (24) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00073021 | ||||||
00118415 | |||||||
Contained_in_operon | CEOP3188 | ||||||
CEOP5630 | |||||||
Ortholog (38) | |||||||
Paralog | WBGene00011115 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Concise_description | This gene encodes a homolog of mammalian PROGRAMMED CELL DEATH 2 (PDCD2). | Paper_evidence | WBPaper00004588 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in X-linked myopathy with excessive autophagy. Is an ortholog of human VMA21 (vacuolar ATPase assembly factor VMA21). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0050760 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22082) | ||
Molecular_info | Corresponding_CDS | R07E5.10 | |||||
Corresponding_CDS_history | R07E5.10a:wp264 | ||||||
R07E5.10b:wp264 | |||||||
Corresponding_transcript | R07E5.10.1 | ||||||
R07E5.10.2 | |||||||
Other_sequence (36) | |||||||
Associated_feature | WBsf226521 | ||||||
Experimental_info | RNAi_result (41) | ||||||
Expr_pattern | Expr1025380 | ||||||
Expr1034888 | |||||||
Expr1155164 | |||||||
Expr2014792 | |||||||
Expr2033026 | |||||||
Drives_construct | WBCnstr00030917 | ||||||
Construct_product | WBCnstr00030917 | ||||||
Microarray_results (34) | |||||||
Expression_cluster (127) | |||||||
Interaction (74) | |||||||
Map_info | Map | III | Position | -3.17464 | Error | 0.000394 | |
Positive | Positive_clone | R07E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00004588 | ||||||
WBPaper00026830 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |