WormBase Tree Display for Gene: WBGene00011116
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WBGene00011116 | SMap | S_parent | Sequence | R07E5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name (5) | |||||||||
DB_info | Database | WormQTL | gene | WBGene00011116 | |||||
WormFlux | gene | WBGene00011116 | |||||||
NDB | locus_tag | CELE_R07E5.10 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011116|UniProtKB=A5JYQ9 | |||||||
family | PTHR31792 | ||||||||
NCBI | gene | 259501 | |||||||
RefSeq | protein | NM_065495.10 | |||||||
TrEMBL | UniProtAcc | Q21826 | |||||||
OMIM | gene | 300913 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 17 Nov 2005 15:24:21 | WBPerson1983 | Event | Acquires_merge | WBGene00011118 | ||||
3 | 22 Nov 2005 13:17:36 | WBPerson2970 | Name_change | CGC_name | pdcd-2 | ||||
4 | 06 Mar 2018 14:40:39 | WBPerson4025 | Event | Split_into | WBGene00303105 | ||||
Acquires_merge | WBGene00011118 | ||||||||
Split_into | WBGene00303105 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pdcd | ||||||||
Allele (24) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00073021 | ||||||||
00118415 | |||||||||
Contained_in_operon | CEOP3188 | ||||||||
CEOP5630 | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00011115 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Concise_description | This gene encodes a homolog of mammalian PROGRAMMED CELL DEATH 2 (PDCD2). | Paper_evidence | WBPaper00004588 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in X-linked myopathy with excessive autophagy. Is an ortholog of human VMA21 (vacuolar ATPase assembly factor VMA21). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0050760 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:22082) | ||||
Molecular_info | Corresponding_CDS | R07E5.10 | |||||||
Corresponding_CDS_history | R07E5.10a:wp264 | ||||||||
R07E5.10b:wp264 | |||||||||
Corresponding_transcript | R07E5.10.1 | ||||||||
R07E5.10.2 | |||||||||
Other_sequence (36) | |||||||||
Associated_feature | WBsf226521 | ||||||||
Experimental_info | RNAi_result (41) | ||||||||
Expr_pattern | Expr1025380 | ||||||||
Expr1034888 | |||||||||
Expr1155164 | |||||||||
Expr2014792 | |||||||||
Expr2033026 | |||||||||
Drives_construct | WBCnstr00030917 | ||||||||
Construct_product | WBCnstr00030917 | ||||||||
Microarray_results (34) | |||||||||
Expression_cluster (127) | |||||||||
Interaction (74) | |||||||||
Map_info | Map | III | Position | -3.17464 | Error | 0.000394 | |||
Positive | Positive_clone | R07E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004588 | ||||||||
WBPaper00026830 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |