WormBase Tree Display for Gene: WBGene00011134
expand all nodes | collapse all nodes | view schema
WBGene00011134 | SMap | S_parent | Sequence | R08A2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | ssp-33 | Person_evidence | WBPerson261 | |||||
Sequence_name | R08A2.3 | ||||||||
Molecular_name | R08A2.3 | ||||||||
R08A2.3.1 | |||||||||
CE23904 | |||||||||
Other_name | CELE_R08A2.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | ssp-33 | ||||||||
DB_info | Database | AceView | gene | 5P191 | |||||
WormQTL | gene | WBGene00011134 | |||||||
WormFlux | gene | WBGene00011134 | |||||||
NDB | locus_tag | CELE_R08A2.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011134|UniProtKB=Q9U393 | |||||||
family | PTHR22947 | ||||||||
NCBI | gene | 179974 | |||||||
RefSeq | protein | NM_074229.5 | |||||||
TrEMBL | UniProtAcc | Q9U393 | |||||||
UniProt_GCRP | UniProtAcc | Q9U393 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 10 Nov 2010 15:19:39 | WBPerson2970 | Name_change | CGC_name | ssp-33 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ssp | ||||||||
Allele (11) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (20) | |||||||||
Paralog (33) | |||||||||
Structured_description | Automated_description | Enriched in amphid sheath cell; germ line; and in male based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty-two chemicals including Ethanol; D-glucose; and Alovudine based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Major sperm protein (MSP) domain; MSP (Major sperm protein) domain; PapD-like superfamily; and Immunoglobulin-like fold. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R08A2.3 | |||||||
Corresponding_transcript | R08A2.3.1 | ||||||||
Other_sequence | GW406158.1 | ||||||||
GW407892.1 | |||||||||
Associated_feature | WBsf1002113 | ||||||||
WBsf1020901 | |||||||||
WBsf232954 | |||||||||
Experimental_info | RNAi_result | WBRNAi00051522 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034735 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1020228 | ||||||||
Expr1155196 | |||||||||
Drives_construct | WBCnstr00030903 | ||||||||
Construct_product | WBCnstr00030903 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (151) | |||||||||
Interaction | WBInteraction000031235 | ||||||||
Map_info | Map | V | Position | 6.7121 | Error | 0.002293 | |||
Positive | Positive_clone | R08A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |