WormBase Tree Display for Gene: WBGene00011135
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WBGene00011135 | SMap | S_parent | Sequence | R08A2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-147 | Person_evidence | WBPerson655 | |||||
Sequence_name | R08A2.4 | ||||||||
Molecular_name | R08A2.4 | ||||||||
R08A2.4.1 | |||||||||
CE48163 | |||||||||
Other_name | CELE_R08A2.4 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-147 | ||||||||
DB_info | Database | AceView | gene | 5P197 | |||||
WormQTL | gene | WBGene00011135 | |||||||
WormFlux | gene | WBGene00011135 | |||||||
NDB | locus_tag | CELE_R08A2.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011135|UniProtKB=Q9U392 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 187693 | |||||||
RefSeq | protein | NM_074232.3 | |||||||
TREEFAM | TREEFAM_ID | TF315636 | |||||||
TrEMBL | UniProtAcc | Q9U392 | |||||||
UniProt_GCRP | UniProtAcc | Q9U392 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-147 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (23) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (130) | |||||||||
Paralog (219) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AFD and neurons based on RNA-seq studies. Is affected by several genes including aak-2; hsp-6; and bar-1 based on tiling array; microarray; and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R08A2.4 | |||||||
Corresponding_CDS_history | R08A2.4:wp235 | ||||||||
Corresponding_transcript | R08A2.4.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00051523 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1025716 | ||||||||
Expr1155197 | |||||||||
Microarray_results | 179681_at | ||||||||
GPL14144_R08A2.4_84-143_0.844_19_A | |||||||||
GPL19516_CGZ0031374 | |||||||||
GPL21109_R08A2.4 | |||||||||
GPL8673_R08A2_4P00035 | |||||||||
GPL8673_R08A2_4P00138 | |||||||||
Expression_cluster (43) | |||||||||
Map_info | Map | V | Position | 6.71693 | Error | 0.001994 | |||
Positive | Positive_clone | R08A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |