WormBase Tree Display for Gene: WBGene00011269
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| WBGene00011269 | SMap | S_parent | Sequence | R17 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sbsp-1 | |||||||
| Sequence_name | R17.3 | ||||||||
| Molecular_name | R17.3a | ||||||||
| R17.3a.1 | |||||||||
| CE16316 | |||||||||
| R17.3b | |||||||||
| CE51722 | |||||||||
| R17.3c | |||||||||
| CE51699 | |||||||||
| R17.3b.1 | |||||||||
| R17.3c.1 | |||||||||
| Other_name | CELE_R17.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | sbsp-1 | ||||||||
| DB_info | Database | AceView | gene | 3L927 | |||||
| WormQTL | gene | WBGene00011269 | |||||||
| WormFlux | gene | WBGene00011269 | |||||||
| NDB | locus_tag | CELE_R17.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011269|UniProtKB=O18003 | |||||||
| family | PTHR20920 | ||||||||
| NCBI | gene | 176513 | |||||||
| RefSeq | protein | NM_001330968.3 | |||||||
| NM_001330967.3 | |||||||||
| NM_066986.6 | |||||||||
| TrEMBL | UniProtAcc | A0A1C3NSJ0 | |||||||
| A0A1C3NSN4 | |||||||||
| O18003 | |||||||||
| UniProt_GCRP | UniProtAcc | O18003 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Jun 2020 18:02:30 | WBPerson1983 | Name_change | CGC_name | sbsp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sbsp | ||||||||
| Allele (127) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | R17.3 encodes an ortholog of human retinal pigment epithelium(RPE)-spondin (RPESP). | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 11 Dec 2006 00:00:00 | ||||||||
| Automated_description | Expressed in intestine and rectal gland cell. Is predicted to encode a protein with the following domains: Somatomedin-B and thrombospondin type-1 domain-containing protein; Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Spondin-like TSP1 domain; Somatomedin B domain; and Somatomedin B-like domain superfamily. Is an ortholog of human SBSPON (somatomedin B and thrombospondin type 1 domain containing). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R17.3a | |||||||
| R17.3b | |||||||||
| R17.3c | |||||||||
| Corresponding_transcript | R17.3a.1 | ||||||||
| R17.3b.1 | |||||||||
| R17.3c.1 | |||||||||
| Other_sequence | FC540457.1 | ||||||||
| JO469447.1 | |||||||||
| ACC14698_1 | |||||||||
| MH04093 | |||||||||
| JI173426.1 | |||||||||
| FC548848.1 | |||||||||
| Associated_feature | WBsf994165 | ||||||||
| WBsf994166 | |||||||||
| WBsf994167 | |||||||||
| WBsf1015868 | |||||||||
| WBsf225767 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052004 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006267 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034953 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11303 | ||||||||
| Expr1027670 | |||||||||
| Expr1034948 | |||||||||
| Expr1155646 | |||||||||
| Expr2005669 | |||||||||
| Expr2023885 | |||||||||
| Drives_construct | WBCnstr00018753 | ||||||||
| WBCnstr00030792 | |||||||||
| Construct_product | WBCnstr00030792 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Positive | Positive_clone | R17 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 5.42492 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
