WormBase Tree Display for Gene: WBGene00011363
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| WBGene00011363 | SMap | S_parent | Sequence | T02B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ocam-1 | Paper_evidence | WBPaper00005164 | |||||
| Person_evidence | WBPerson84 | ||||||||
| Sequence_name | T02B5.2 | ||||||||
| Molecular_name | T02B5.2 | ||||||||
| T02B5.2.1 | |||||||||
| CE42357 | |||||||||
| Other_name | CELE_T02B5.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ocam-1 | ||||||||
| DB_info | Database | AceView | gene | 5O646 | |||||
| WormQTL | gene | WBGene00011363 | |||||||
| WormFlux | gene | WBGene00011363 | |||||||
| NDB | locus_tag | CELE_T02B5.2 | |||||||
| NCBI | gene | 187978 | |||||||
| RefSeq | protein | NM_074106.4 | |||||||
| TrEMBL | UniProtAcc | P92014 | |||||||
| UniProt_GCRP | UniProtAcc | P92014 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 27 Apr 2006 11:26:11 | WBPerson2970 | Name_change | CGC_name | ocam-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ocam | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00047671 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrV_pilon.g16444 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | ocam-1 encodes a protein with an OCAM domain, a nematode-specific motif conserved between OCAM-1 and two other nematode ONECUT homeodomain proteins (CEH-21 and CEH-41); ocam-1 is probably derived from a ONECUT gene that lost both its cut domain and its homeodomain; ocam-1 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00005164 | |||||
| WBPaper00005654 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson13481 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 07 Jan 2009 00:00:00 | ||||||||
| Automated_description | Enriched in M cell; Z1.p; Z4.a; male distal tip cell; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including eat-2; elt-2; and sir-2.1 based on tiling array; microarray; and RNA-seq studies. Is affected by Rifampin; allantoin; and Colistin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T02B5.2 | |||||||
| Corresponding_CDS_history | T02B5.2:wp188 | ||||||||
| Corresponding_transcript | T02B5.2.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00018010 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052188 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015405 | ||||||||
| Expr1155821 | |||||||||
| Expr2014595 | |||||||||
| Expr2032828 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (45) | |||||||||
| Interaction (51) | |||||||||
| Map_info | Map | V | Position | 6.18442 | |||||
| Positive | Positive_clone | T02B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005164 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
