WormBase Tree Display for Gene: WBGene00011382
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| WBGene00011382 | SMap | S_parent | Sequence | T02E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dop-5 | Person_evidence | WBPerson260 | |||||
| Sequence_name | T02E9.3 | ||||||||
| Molecular_name | T02E9.3a | ||||||||
| T02E9.3a.1 | |||||||||
| CE13066 | |||||||||
| T02E9.3b | |||||||||
| CE53006 | |||||||||
| T02E9.3b.1 | |||||||||
| Other_name | CELE_T02E9.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | dop-5 | ||||||||
| DB_info | Database | AceView | gene | 5L844 | |||||
| WormQTL | gene | WBGene00011382 | |||||||
| WormFlux | gene | WBGene00011382 | |||||||
| NDB | locus_tag | CELE_T02E9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011382|UniProtKB=O45732 | |||||||
| family | PTHR24247 | ||||||||
| NCBI | gene | 179571 | |||||||
| RefSeq | protein | NM_073483.7 | |||||||
| NM_001373110.2 | |||||||||
| TrEMBL | UniProtAcc | A0A486WU00 | |||||||
| O45732 | |||||||||
| UniProt_GCRP | UniProtAcc | O45732 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Feb 2010 11:37:06 | WBPerson2970 | Name_change | CGC_name | dop-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dop | ||||||||
| Allele (59) | |||||||||
| Strain | WBStrain00031498 | ||||||||
| WBStrain00005328 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | dop-5 encodes a homolog of human melatonin type 1b receptors, and more generally of mammalian dopamine and serotonin (5-HT) receptors; dop-5 is partly required for male tail curling, with dop-5 (RNAi) animals showing reduced curling in exogenous 5-HT; dop-5 is required for full sensitivity to 5-HT, normal brood sizes, and pharyngeal pumping; dop-5is expressed in head and tail neurons. | Paper_evidence | WBPaper00006132 | |||||
| WBPaper00006180 | |||||||||
| WBPaper00024527 | |||||||||
| WBPaper00028762 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 25 May 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to be located in dendrite. Expressed in neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T02E9.3a | |||||||
| T02E9.3b | |||||||||
| Corresponding_transcript | T02E9.3a.1 | ||||||||
| T02E9.3b.1 | |||||||||
| Other_sequence | CJC01119_1 | ||||||||
| JI173460.1 | |||||||||
| Oden_isotig19975 | |||||||||
| CBC14014_1 | |||||||||
| Acan_isotig08597 | |||||||||
| JI472318.1 | |||||||||
| JI211359.1 | |||||||||
| JI480948.1 | |||||||||
| Dviv_isotig25549 | |||||||||
| Oden_isotig28004 | |||||||||
| Associated_feature | WBsf1001330 | ||||||||
| WBsf1001331 | |||||||||
| WBsf234529 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00069716 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00069724 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052217 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069732 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018028 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000827 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069736 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069700 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072222 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2713 | ||||||||
| Expr4338 | |||||||||
| Expr7941 | |||||||||
| Expr13039 | |||||||||
| Expr1023065 | |||||||||
| Expr1035009 | |||||||||
| Expr1155849 | |||||||||
| Expr2011030 | |||||||||
| Expr2029267 | |||||||||
| Drives_construct | WBCnstr00000007 | ||||||||
| WBCnstr00011931 | |||||||||
| WBCnstr00013015 | |||||||||
| WBCnstr00030696 | |||||||||
| Construct_product | WBCnstr00030696 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (177) | |||||||||
| Interaction | WBInteraction000189013 | ||||||||
| WBInteraction000541543 | |||||||||
| WBInteraction000556458 | |||||||||
| Map_info | Map | V | Position | 3.07691 | Error | 0.000553 | |||
| Positive | Positive_clone | T02E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
