WormBase Tree Display for Gene: WBGene00011508
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| WBGene00011508 | SMap | S_parent | Sequence | T05H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mtre-1 | Person_evidence | WBPerson3680 | |||||
| Sequence_name | T05H10.3 | ||||||||
| Molecular_name | T05H10.3 | ||||||||
| T05H10.3.1 | |||||||||
| CE01640 | |||||||||
| Other_name | CELE_T05H10.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | mtre-1 | ||||||||
| DB_info | Database | AceView | gene | 2I340 | |||||
| WormQTL | gene | WBGene00011508 | |||||||
| WormFlux | gene | WBGene00011508 | |||||||
| NDB | locus_tag | CELE_T05H10.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011508|UniProtKB=Q09347 | |||||||
| family | PTHR34493 | ||||||||
| NCBI | gene | 174292 | |||||||
| RefSeq | protein | NM_063287.9 | |||||||
| SwissProt | UniProtAcc | Q09347 | |||||||
| TREEFAM | TREEFAM_ID | TF316187 | |||||||
| UniProt_GCRP | UniProtAcc | Q09347 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | mtre-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mtre | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00002994 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00004973 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00189995 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011548 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00013573 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044391 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044024 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020983 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00015679 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in several structures, including Caaaaa; Caaaap; Caaapa; Caaapp; and Caappd based on Chronogram; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by thirty-two chemicals including cholesterol; lathosterol; and aldicarb based on microarray; RNA-seq; and proteomic studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05H10.3 | |||||||
| Corresponding_transcript | T05H10.3.1 | ||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf650286 | ||||||||
| WBsf650287 | |||||||||
| WBsf665759 | |||||||||
| WBsf665760 | |||||||||
| WBsf665761 | |||||||||
| WBsf223434 | |||||||||
| WBsf223435 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035232 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052575 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018253 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram775 | ||||||||
| Expr6619 | |||||||||
| Expr16422 | |||||||||
| Expr1021595 | |||||||||
| Expr1035069 | |||||||||
| Expr1156190 | |||||||||
| Expr2005902 | |||||||||
| Expr2024118 | |||||||||
| Drives_construct | WBCnstr00003496 | ||||||||
| WBCnstr00030602 | |||||||||
| WBCnstr00043002 | |||||||||
| Construct_product | WBCnstr00030602 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (236) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Positive | Positive_clone | T05H10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 0.658036 | |||||||
| Reference | WBPaper00066158 | ||||||||
| Method | Gene |
